Gene Plim_2401 details

Gene Information

• Locus tag: Plim_2401
• ID: 9139112
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 3128285
• End bp: 3130240
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 56%
• Product: WD-40 repeat protein
• Protein accession: YP_003630426
• Protein GI: 296122648

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.402251
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGATCG CAATCACCAT CCTCTCTGGC TTCGCCTGTG CGATCGCCTG CGGTCTGATT 
TGTTCCACGA CCTCATGGGC AGAAGAAACT CGTCCGCCCG AGGAATTGAC TGCCGCTGTC 
GCTCGAACTT CAGAAGTCTG GAAGTCGGCG ACCTCGCGCC GGCTCGCTGC GGAAGAGGTC 
TTGCTGAATG CCCAGAATCA ACTAAGGCGT GCAGCCAAGC CACTTGATCC CGTACACGAC 
CAACTGGGCG AAATCCGTCG TGAGATGGAC GCCAGCCAGA AAGAGATCCG CGAGCTTCGC 
GAGAAGTTCG CCAAGTCGAC CGTAAAAGAC GATGAACTGC CCGGAGCCCC CTACCCTTCA 
GAAAAAGAGG CTGCTCTACA GCGAAAAGTC ATCGAGCTGA AGCAGCGTCA GGAACCACTG 
CAGGAGCAAC TTCAACAAGC GGAACCCGAA CTGAAAGCAC TCCGCCAAGC CGTCGATCAA 
GCCCGCGAAG CGTTCGAAGT TTTGACCATC GAAGAGGAAG CTCGACGCTT TGATCATCGT 
GTCGCGGACA CCCGCCTCAC GGCATGGCTT CAAGCCGCAG AAGTTCGTCA GGCACCCCGG 
GACGAAGATC TGAAAAACGG TCGATGGGGT GATGGAAAAT TGACCTTCGC CAGGCACATT 
GCCCCCCTGC TGGTCGAACA TTGCTATGCC TGCCATAACA GCCGGGTGGC TGGAGGCAGC 
CTCAATCTGG AGAACTGGGC GAGCCTGCAG CGTGGTGGAG AATCCGGAGC AGTTCTTATC 
CCTTCCCGCC CCGAAGAATC ATCACTTTAT ACTGATTGCC GCGAAGGCTT AATGCCCAAA 
GATCAGCCTT CACTCTCTGA TCTTCAGCTC GCGTTGCTCC GGCACTGGAT TGAACAAGGT 
GCCTCGCCGG GTATCGGTCT CCACGAGCAA ACATCGATTG TGACTATGGT TGGAGCAGCC 
AGCACTAATC CGGCGGTAAA CTCCACAACG ACTGTCACTC GCCCGGTAGC CGTCACAGCG 
CTGGCCATGC ATCCTTCCTC CGGCGAGATT GTCACATCTG GCTATCGGGA AGTACTTGCC 
TGGGATCGAG CCGCACAGCT CTCGCACCGC CTGCAATTGC CATGTGAACG AGTCTTATCG 
CTGAGTTTTT CGCCCGATGG CCAGACGCTT GCCATCGCTT CCGGGAAGCC CGGCCGATGG 
GGTGCCATCA GCATTGCTCC CTGGCCACTC TCGTCGGCAA CATCACCAAC CTATCGAACC 
ATCGCCATGA CGGTCGATGA AGCCACAGCA GTTCGTTTTT CACCCGATGG CAAATGGCTG 
GCAACCGGCG GAACGGATCG GGCCATCCGC TGGTATGAAA GACAATCGCT CATCGAGTAT 
CGACTCTCCG AAGATCATTC CGACTGGATC ACCGCTCTGG TCTGGACACC TGACAGCCAG 
CGACTGCTCT CTGCCAGTCG AGACAAAACG ATCAAAGTGG CCTCGGCCCG AACTGGCAAT 
ATTGAACTGA CTTTTTCATC TCATACGAGC TCGATCAGTG ATGTCGTTTG TCTTTCAGAG 
AAGCAGGCCG CCAGTATCGC TCAGGAAGCA CAACTTCTGA TCTGGAGTAT TGCGGATGGC 
AAAGTCGTAC AGAAAGTGAA GCTCCCCGCA GTTCCTGTTC GCCTGGCCTA CCGCCCTCAA 
AACTCCGCTG CCGGGATCGA AGAATGCCTC GCTATCGCAC TTCGCGATCA GCAGATCGTG 
CTCATTGGCG GTGATCCCGA AAAGCGATCT ATTACAAACC GACTGAAACT TCCTGCAGTG 
GCTCTTTCAC TGGCGTTTGA TGGAACCACA GGCGATCTGC TGGCAGGCGA TCAACATGGC 
CGCATGGTAC GCTTCGATGC CAAAGGGTTA TCGAAAGAGA GCAAAGCGAC TGACAGCGAG 
GCAAAGCCGA TCGAGTGGCT GAATCAGCCC CGGTAA 

 

Protein sequence

MSIAITILSG FACAIACGLI CSTTSWAEET RPPEELTAAV ARTSEVWKSA TSRRLAAEEV 
LLNAQNQLRR AAKPLDPVHD QLGEIRREMD ASQKEIRELR EKFAKSTVKD DELPGAPYPS 
EKEAALQRKV IELKQRQEPL QEQLQQAEPE LKALRQAVDQ AREAFEVLTI EEEARRFDHR 
VADTRLTAWL QAAEVRQAPR DEDLKNGRWG DGKLTFARHI APLLVEHCYA CHNSRVAGGS 
LNLENWASLQ RGGESGAVLI PSRPEESSLY TDCREGLMPK DQPSLSDLQL ALLRHWIEQG 
ASPGIGLHEQ TSIVTMVGAA STNPAVNSTT TVTRPVAVTA LAMHPSSGEI VTSGYREVLA 
WDRAAQLSHR LQLPCERVLS LSFSPDGQTL AIASGKPGRW GAISIAPWPL SSATSPTYRT 
IAMTVDEATA VRFSPDGKWL ATGGTDRAIR WYERQSLIEY RLSEDHSDWI TALVWTPDSQ 
RLLSASRDKT IKVASARTGN IELTFSSHTS SISDVVCLSE KQAASIAQEA QLLIWSIADG 
KVVQKVKLPA VPVRLAYRPQ NSAAGIEECL AIALRDQQIV LIGGDPEKRS ITNRLKLPAV 
ALSLAFDGTT GDLLAGDQHG RMVRFDAKGL SKESKATDSE AKPIEWLNQP R