Gene Plim_2295 details

Gene Information

• Locus tag: Plim_2295
• ID: 9139000
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: +
• Start bp: 2964663
• End bp: 2968031
• Gene Length: 3369 bp
• Protein Length: 1122 aa
• Translation table: 11
• GC content: 55%
• Product: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
• Protein accession: YP_003630320
• Protein GI: 296122542

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTTTCAC GCTTCTTTAT TGATCGACCG ATCTTTGCCA GTGTGCTTTC GATTGTGATC 
ACACTCGCTG GTGGAATCGC CGTTTTTACA CTGCCGATTA CTCAATACCC TGAGATCACA 
CCACCGACTG TCGAAGTCTC AGCCATCTAC CCGGGAGCCA ATGCTCAAGT GGTGGCGGAT 
ACCGTCGCGT CACCTATTGA ACAGCAGGTC AATGGTGTCG AGGGCATGCT CTACATGACC 
TCGCAATGTG CCAACGATGG CAGCTACACA CTCACAGTGA CATTCGCCCC GGGTAGCAAT 
CTGAACATCG CCCAGGTGCT GGTGCAGAAT CGTGTGGATC TGGCCGAACC AGTGCTCCCC 
GACCTCGTCA ACCGCCGCGG GATTCTGGTC AAGAAGAAAT CGCCGTCGGT GTTGATGATC 
GTCAATCTGT ACTCGCCCGA CAATTCGCGC GACAACCTTT ACCTCAGCAA TTACGCGACA 
ATTCAATTAC GTGATGAACT TTCCCGCCTG CCGGGAGTGG GTGATATCAC ATATCTCGGA 
CGTCGCGATT ACAGCATGCG CGTCTGGCTG GATCCTGATA AGCTCGCCTC ATTGGGGCTA 
TCCTCCAGCG ATGTCGTGCA TGCGATTGAA CAGCAGAACG TGCAGGTCGC AGCCGGTCAG 
ATTGGCCAGC CACCTGCGCC CAGTGATCAG GTTTTTCAGT TCACAATGAC GACTGTGGGA 
CGACTGGCCG ATGACCAGCA GTTCGGCGAA ATCATTGTAA AAACAGATGC CGACGGCCGA 
ATCATTCGCC TGCGTGATGT CGCCCGCACC GAGTTAGGGG CCCTCGCTTA CGATCAAGTC 
TGCACACTGG ATGGAAAACC CTCGGTGGCA CTTTCGGTCT ATCAGCTTCC GGGATCCAAT 
GCCCTCGAAG TCGCCGAGAG TGTCCGTAAG AAAATGGAGC AGCTCAAAAC CCGCTTCAAG 
CCGGGAGTCG ACTATTCGAT TGTGTACGAC ACCACGCCGT TCATCGAAGA ATCGGTCAGT 
GAAGTTTTTA CGGCCCTGCG CGACGCAGTC ATTCTCGTCG CGATTGTCGT GCTGATTTTC 
CTGCAGGGCT GGCGGGCCGC GGTGATTCCT CTGGTGGCTG TTCCCGTGGC GATTGTAGGA 
ACCTTTGCGG CCATGGCGGC GTTTGGTTTC AGTCTCAACA CGCTGACACT CTTCGGCCTG 
GTGCTGGCCA TCGGGATTGT GGTGGATGAT GCCATTGTCG TCGTCGAAGC GATCGAGCAT 
CACATTGAAC ACGGACTGTC TCCGCGCGAA GCCGCCATTC GTGCCATGGA TGAAGTCGCG 
GGCCCCGTCA TCGCCGTCGG GCTGGTGCTG AGTGCGGTTT TTCTCCCGTG TGTGTTTATC 
ACCGGGATTG TCGGCCAATT CTTCCAGCAG TTCGCACTGA CGATTGCCAT TTCGACAGTG 
ATCTCGGCAT TCAACTCGTT GACACTCAGC CCTGCCCTGG CGGTGTTGCT CCTCAAGCCC 
CGCGCGCATG GTCATGCCCC TGAACCGCTC CCCCGCGTGG GAATTGTGCT GGTCGCTGTC 
CTGGGGGCTT ATCTTCTCGG CCCACGTCTG CTGGCCGACT ATCAGTTCGC GGAAATGCCT 
TATTTCAAAT ACATAATGGC AAGTCTGGCG TTGATCCTGG CAGTTCCTCT GGCGGGCTGG 
ATCAATCGAT TGTTGAGTCT GTTCTTCCGC GGTTTCCAGG AAGTGTTCGA CGCCTTAACG 
GCAGGTTACA TTTCGATAGT GTCGAGTCTA TTACGAATCA ATCTGCTGAT GATGTTCGTT 
TATGCGGGCT TGCTGTACGC GACTGTTGAA GTTTTCAATC GCGCTCCGGC GGGTTTTATT 
CCAGCTCAGG ATAAAGGCTA CCTGCTGGTC AATGTTCAAC TTCCGGATGC CGCTTCGCTG 
GATCGTACAG AAGCCACTCT GGCCAGCATT CACGAGATTG CCAAAGAGAC CAAAGGAATT 
CGGCATACCG TGGGCATTGC CGGTCAGTCG CTCTTGCTGG GAGCTAATGC ACCCAACTTC 
GGGACGTTCT ATTTCATGCT CGACGATTTC GAACATCGGC ATGAACCTGG CCTCATGGCG 
AAAGCATTGG CTATGCAACT AGAGGAAAAA CTTGCCAGAG CGATCCCTGA AGCGCGGATC 
AACATTCTCG GAGCACCCGC GATCGACGGA TTAGGAAACG CCGGCGGCTT TCGCCTGATG 
ATCGAAGATC GTGGCGATAA CGGGTTGACG GCACTCGAAT CCCAATCGAA ACTTCTCATC 
GAAAAGGCAC AAACAAACCC CATTTTTGAC CGCGTGTTTT CCAGTTTCAG CGCGAATACA 
CCCTGGCTGT ACATCGATGT GAACCGCGAT GCAGCCAAAG CCATGGGTGT CTCGATTGAC 
GATCTGTTCA GTGCGATCCA AACGCATTTT GGCTCGCTGT ACGTCAATGA TTTCAATCGT 
TTTGGCCGGA CTTGGCAGGT GAATGTTCAA GCCGATGGTG ATTTCCGGCT TTCTCCCGAC 
GACATCAAGC ACTTGAAGAT CCATAACTCA CATGGCGAAG TCGTACCTCT GGCTGCCGTG 
GCCACCACGC GAGAGGCTAG CGGCCCTTCC ATGATCATCC GGCATAACCT TTATCCTTCG 
TCCACTGTCA ACCTCGACTC AGTTCAGGGT GCCAGTTCCG GCGAGACCAT CGAGACGATG 
AAGGCCATTG CCGATCGCGA ACTCTTCGAA AATATGCGGG CCGAATGGAC AGAACTGGCC 
TATCTGCAAC AGCAGGCCGG GAACACCGCG ATCTATGCAT TTCTTCTCGC GGTTGTGCTC 
GTGTTTCTCG TCCTCGCCGC TCAATACGAA AGCTGGGCTT TGCCGCTGGC GGTGATTCTC 
GTGGTGCCCA TGTGCCTGTT GTGCTCGATT CTGGGTGTGC TGCTCACGGG CCAGGATGTC 
AACATTTTCA CACAGATTGG CTTTGTGGTG CTGGTGGGGC TCGCGTGTAA AAACGCTATT 
CTGATTGTCG AATTCGCCAG AGCACGGCGA GCCGCTGGTG TTCCCCGTCA ACAGGCGGTA 
CTGGAAGCAT GCCAGTTGCG TCTGCGTCCA ATCATCATGA CATCACTGGC GTTCATCCTG 
GGTGTGGTGC CGCTGATGAT TGGCGAAGGG GCTGGTGCCG AAATGCGCCA AGCTCTGGGA 
ACTGCCGTTT TCTGGGGCAT GCTGGGAGTA ACACTCTTTG GCATTTTCCT GACCCCCATT 
TTCTACGAAG TGATTCAGTG GGTTGTCGAT TGGCGCAAAA CCAAAGCTGA CAAACGATCT 
GCGAACGCAA GTAACAGTCG AACCTTAGAC ACGACCACCG TTTCGGAGTC TGGTCTGGCG 
AAGATGTAG 

 

Protein sequence

MFSRFFIDRP IFASVLSIVI TLAGGIAVFT LPITQYPEIT PPTVEVSAIY PGANAQVVAD 
TVASPIEQQV NGVEGMLYMT SQCANDGSYT LTVTFAPGSN LNIAQVLVQN RVDLAEPVLP 
DLVNRRGILV KKKSPSVLMI VNLYSPDNSR DNLYLSNYAT IQLRDELSRL PGVGDITYLG 
RRDYSMRVWL DPDKLASLGL SSSDVVHAIE QQNVQVAAGQ IGQPPAPSDQ VFQFTMTTVG 
RLADDQQFGE IIVKTDADGR IIRLRDVART ELGALAYDQV CTLDGKPSVA LSVYQLPGSN 
ALEVAESVRK KMEQLKTRFK PGVDYSIVYD TTPFIEESVS EVFTALRDAV ILVAIVVLIF 
LQGWRAAVIP LVAVPVAIVG TFAAMAAFGF SLNTLTLFGL VLAIGIVVDD AIVVVEAIEH 
HIEHGLSPRE AAIRAMDEVA GPVIAVGLVL SAVFLPCVFI TGIVGQFFQQ FALTIAISTV 
ISAFNSLTLS PALAVLLLKP RAHGHAPEPL PRVGIVLVAV LGAYLLGPRL LADYQFAEMP 
YFKYIMASLA LILAVPLAGW INRLLSLFFR GFQEVFDALT AGYISIVSSL LRINLLMMFV 
YAGLLYATVE VFNRAPAGFI PAQDKGYLLV NVQLPDAASL DRTEATLASI HEIAKETKGI 
RHTVGIAGQS LLLGANAPNF GTFYFMLDDF EHRHEPGLMA KALAMQLEEK LARAIPEARI 
NILGAPAIDG LGNAGGFRLM IEDRGDNGLT ALESQSKLLI EKAQTNPIFD RVFSSFSANT 
PWLYIDVNRD AAKAMGVSID DLFSAIQTHF GSLYVNDFNR FGRTWQVNVQ ADGDFRLSPD 
DIKHLKIHNS HGEVVPLAAV ATTREASGPS MIIRHNLYPS STVNLDSVQG ASSGETIETM 
KAIADRELFE NMRAEWTELA YLQQQAGNTA IYAFLLAVVL VFLVLAAQYE SWALPLAVIL 
VVPMCLLCSI LGVLLTGQDV NIFTQIGFVV LVGLACKNAI LIVEFARARR AAGVPRQQAV 
LEACQLRLRP IIMTSLAFIL GVVPLMIGEG AGAEMRQALG TAVFWGMLGV TLFGIFLTPI 
FYEVIQWVVD WRKTKADKRS ANASNSRTLD TTTVSESGLA KM