| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_2188 |
|---|
| Symbol | |
|---|
| ID | 9138892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | + |
|---|
| Start bp | 2823015 |
|---|
| End bp | 2824343 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003630213 |
|---|
| Protein GI | 296122435 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACTCTG CGGAAACTCC GATCACCTCC GCGGAATCCA CAAGTCCACT GAAAAGCACG
GCTCCACTTC AAGGTGAGCG AGTCACATTT ACGGGAACGC TGGCTTCGAT GACCCACCGG
GAAGCAGCCG GATATGTCGA GCAGTTTGGG GGAACTTTCA CGACTCAGGT TTCCCAGCAG
ACAACCCTGC TGGTCGTCGG CGATGAAGGT TGGCCACTGG AAGAAGATGG TCAACCTTCG
TTAAAGCTGG AGGCTGCTCG TGAACTGCTC GAACGGGGAT TCCCGATCAA AATTCTGAGC
GAACCCGAAT GGCTGCAGTT GATTGAGCTG GAAAGCCCTT CTCCAGCAGA TCGCAGGGTT
TTTACGCCAG CCATGCTGAG TCAGTTAATG AAACTTCCCG TTTCGCGCAT CCGTCATTGG
GAACGCCTGG GACTCATTCG ACCAGTTCGA CGAGTTTGCC GATTGCCTTA CTTCGACTTT
CAGGAAGTGA CGGGGGTTCG CCGACTGGCA GATCTGATTT CTACCGGGAT TTCTCCCAAG
AAAATCGGAG CCAGCCTGGA GAAGCTGAAG TCGCTGCTCC CCACGATTGA AAGACCTCTG
GCTCAACTCG AAATTCTCTC GCAAGACCAT CAACTTTACA TTCGGGACGC TGCCAGCCTG
CTGGATCCCC AGACAGGTCA GCGGATCTTT GATTTCCATG AAATCACTCT CAGCGACGGC
GAAAGTTCGG CAAACAAGCT GGAATCAGAC GATGGTTCCG CTTCTGAAAA TACGCTGACA
ATCCCCTTTC CTGGCCATAC CAAAGCGATT CATGGCCTGC AGAATCCCTC CAGAAACTGG
GGAGCCAATG AATGGGCTCA TGCCGGTTCA ACATTGCTCG ACTCCGGCGA AACAGTGGCC
GCCATCCAGG CTTTTCGCAG AGCCTTGCTG CTGGCTCCTC ACGAAGCCTC GATTCATTTT
CAATTAGCCG ATGCCTTATA CCGCTCTGGA AATTATGCGG GAGCCGCAGA ACGGTATCAT
GTGGCTGTGG AATGCGATGC CGAGTATATC GAGGCCTGGA CGCAACTGGG GTGTGTCCTG
GCACAAATGG GTGATACCAA GGCAGCCAGC GAAGCGTTTG AAGCTGCCCT GCTGCTCCAC
CCGGATTATC CCGATGCTCA TCTGCATCTG GCAGAACTTT TTGAGCAGAT CGGCCAGCAT
TTGAAAGCCC GTCCTCATTG GCTGCGCTAT CTCGACTTCG ACAACCGCGG GCCATGGGCC
GATATGGCCA GAGAACGATT GGAACGATCT CATGGTGATG CTTCTGAATC CCCACTTGAA
AACCTGTAA
|
|---|
| Protein sequence | MNSAETPITS AESTSPLKST APLQGERVTF TGTLASMTHR EAAGYVEQFG GTFTTQVSQQ
TTLLVVGDEG WPLEEDGQPS LKLEAARELL ERGFPIKILS EPEWLQLIEL ESPSPADRRV
FTPAMLSQLM KLPVSRIRHW ERLGLIRPVR RVCRLPYFDF QEVTGVRRLA DLISTGISPK
KIGASLEKLK SLLPTIERPL AQLEILSQDH QLYIRDAASL LDPQTGQRIF DFHEITLSDG
ESSANKLESD DGSASENTLT IPFPGHTKAI HGLQNPSRNW GANEWAHAGS TLLDSGETVA
AIQAFRRALL LAPHEASIHF QLADALYRSG NYAGAAERYH VAVECDAEYI EAWTQLGCVL
AQMGDTKAAS EAFEAALLLH PDYPDAHLHL AELFEQIGQH LKARPHWLRY LDFDNRGPWA
DMARERLERS HGDASESPLE NL
|
|---|
| |