| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_2128 |
|---|
| Symbol | |
|---|
| ID | 9138831 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 2752754 |
|---|
| End bp | 2754238 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | Bacteriophage capsid protein-like protein |
|---|
| Protein accession | YP_003630154 |
|---|
| Protein GI | 296122376 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCCCATCG GTGCCTATCT GCCGCCGTTT GTCCGCCGAG CTGGTCTGGC CTTTGCCAAA
TCACTCGAAG GGGCATTCGC GTATGACGCG GTCAAGAACA ATGGCCGCCG CCGTCCGGCT
GATGGAATTG TCCGCAGTGC CGATGCGGAA CTGAACGCTG AAGACCGCCG CCGGTTGCTC
TCTGACAGCC GCACGATCGA GCAGAATTTC AGTGTTGTGG GGTGGATGGT GCGCAAGCAT
CTCGACTACA CGACCACCTT CTCGTTCGAT GCCAAGTCCG GCGACGATTA CACGGATCAG
TGGCTCGAAG ACTTTGTGGC CGAATGGAGC CAGCCCGAAA ACTTCGACGC CGCGCACCGC
ATGGATATGG ACGGCTTTTT GCGAGTCGCC GAGGGCCGCC GGTGTATCGA TGGCGATTGC
GGGATGCTGA AGCTGGAGAC TGGCCAGTTG CAGGCCATCG AAGGGGATCG CATCAGAACG
CCTTACAACG GGCTCCCCAA CGATGTGCCC AAGGATCAAG TGATCCATGG CGTGCAGACT
GATGTCAACC AGGCGGGCCG AGCTCTGGCG TATGCCGTCT GCCGCCGGGC GAAGACCACC
GATTACGGCC AGATCGGTCT CGATTTCCAG TTTGAACGCA TGGTGCCCGT GCGGGACATG
CTGCTGTATG CCAGCTTCGA GCGATTCGAC CAGACGCGCG GCATCAGCCC ACTGGCGGCT
GGCCTCAATC CGCTCAAAGA CCTCTACGAA GGATTTGATT ACACCCTGGG CAAGATCAAG
CTGGCCCAGC TCTTTGGCCT GGTGCTCTTT CGTGGTGATC CTGCCAGCTT AACGCAGGAG
ACCTACGACG AAGAAAACGC CCAGGACTAC AGCAAGATCA ACCTCAACAG TCAGAGGATT
CTTGACCTTG ATGTGGGCGA CCGGGCCGAG TTTCTCGAAA GCCGCACCCC TGCCGCCGAT
ACGGCCGCCT TCTTCCAGCA GATGCTGGCC TTGACCCTGA AGACGTTCGA CATCCCCTAC
TCGTTTTACA ACGAGAGCTT CAGCACTTAT TCCGGCAGCC GTCAGGCACT GCTGATGTAT
GAGCAATCGG CCCATAACAG CCGCAAGCTC CCCATTCGCA CGCGCAACCA TCTCCTCAAG
TGGCGGCTGG CTGTCGCTCT GCTGAACAAC CAGATTCCGA GCCGCGTCAA GATCGAGCTG
ATGCGCTGGA GCTGGATACA TGCGGGCCTC CCGTGGATTG ATCCACTCAA AGAAATCACA
GCCGATCTGG CGGCTGTTCG CGGGCGGCTG GCCTCCCGCA CTCAGATTTG CCGACTTCGC
GGAACGGACT TCTACCAGAT CGTCGATGAG CTGGCCCGCG AAGAAGACTA CATGCGCAAG
AAGAGCGTCT CGGTCTCCGA GATTGACGAC AAGACGCTCT CCGAGCTGGC CCAAGCTGCC
GAGCCATCAC AGCCCCCAAA TGGAGAGGGA GAGGACAATG CCTAG
|
|---|
| Protein sequence | MPIGAYLPPF VRRAGLAFAK SLEGAFAYDA VKNNGRRRPA DGIVRSADAE LNAEDRRRLL
SDSRTIEQNF SVVGWMVRKH LDYTTTFSFD AKSGDDYTDQ WLEDFVAEWS QPENFDAAHR
MDMDGFLRVA EGRRCIDGDC GMLKLETGQL QAIEGDRIRT PYNGLPNDVP KDQVIHGVQT
DVNQAGRALA YAVCRRAKTT DYGQIGLDFQ FERMVPVRDM LLYASFERFD QTRGISPLAA
GLNPLKDLYE GFDYTLGKIK LAQLFGLVLF RGDPASLTQE TYDEENAQDY SKINLNSQRI
LDLDVGDRAE FLESRTPAAD TAAFFQQMLA LTLKTFDIPY SFYNESFSTY SGSRQALLMY
EQSAHNSRKL PIRTRNHLLK WRLAVALLNN QIPSRVKIEL MRWSWIHAGL PWIDPLKEIT
ADLAAVRGRL ASRTQICRLR GTDFYQIVDE LAREEDYMRK KSVSVSEIDD KTLSELAQAA
EPSQPPNGEG EDNA
|
|---|
| |