Gene Plim_1847 details

Gene Information

• Locus tag: Plim_1847
• ID: 9138548
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Planctomyces limnophilus DSM 3776
• Kingdom: Bacteria
• Replicon accession: NC_014148
• Strand: -
• Start bp: 2416894
• End bp: 2418921
• Gene Length: 2028 bp
• Protein Length: 675 aa
• Translation table: 11
• GC content: 54%
• Product: sigma-54 factor interaction domain-containing protein
• Protein accession: YP_003629876
• Protein GI: 296122098

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCAAG AGGTTATTAC AAAAGCAGAC CCCGCATACC TGGTCGTTCG CACCGGCGTG 
AAACGCGGTG ATGTCTACCG ATTGCCTCAT AACCAGGTGA CAACGATTGG CCGGGCGACC 
ACTTGCCGCA TCGTTGTGCA GGACGAAATC TGCAGCCGTA ATCATTGCGA GCTGTTTTTT 
GACGTCAATT GCTGGCGCCT GCGAGATTGT GGCAGTCGCA ATGGGACAAA ACTGCGTGGT 
GAACGCATTT CAGGCGATGT GGAGTTGAAG TTTGGCCAGT CGTTTCAGAT TGGCAGCACG 
ATTTTTGGCC TGGCCGGAAG TCTCACGCAG CGTTGGGATG ATGACGATGG GTTGGATGAG 
CCCATTGAAT CTGACACAGT CGATGCACTC CGCGAGCGGC ACGAAAGCGA CAGTAATCCA 
GAGATCCTAC ATCGCCGGCG TCAGTCCCGC TTCCGGCAAC CTGTGGACGC TGCCGCCAGA 
GATAAGACTT CGCTTGAGCT TTCGAGGTTG TATCGACTGG CTTTGGAAAT GGGTTCAGCC 
ACGACAGCTC AAGGCCTCTC AGAAATTGTG CTTGAAGGTC TCCTCAATGC ATCATCGGCC 
ACCATCGGGG CCATTTTGCT GATGAGTTCG AGCCTCGCCA AAAATTCTGG CGGCAACGAT 
CAACTTTCGG TTGTGGCTTA TCGAGCTCAA AACCATCAGC CCTACCATCC GGTGTCTGAT 
TCATTATCGC AGATTGTCCT CAAGGATCAG GAAGCGGTTC TGGCTCGCGA TATCTCTTCG 
GATGATCGAT TTCTGGATCG GGACAGTCTG GGTGAGATCG AGGCTCAGAG CGTTATCTGT 
GCACCTGTAC GCACAGCAGA AAAGGTATAC GGGCTCATTC ATCTTTACTC GACAGATAAC 
GTGAGCCAAC TCGAAGTCGA CGACCTGGAG TTTACATTGG CTGTGGCTGA TCAGATGGCC 
GCTGGTCTGG AACAGTTGCA ACGTGTCGAG AAGCTTCAGG CAGGTTTGCA GCGTGCCGAG 
GTCGAAAATC AGACGCTGCG TGAGCAATTA CGCAGTGAGA TGGATCTGAT TGGCGAAAGC 
CCGGCCATGC AGCAGTTGAA AAACCGGATC GCACGCATTG CTCCAACAGA TGCGACCGCA 
CTCATTCGGG GGGAAAGTGG CTCTGGCAAA GAATTGATCG CGCGGGCGAT TCATTTGCAT 
AGCAACCGTC GGGGTGGCCC TTTCATTACG ATGAACTGTG CTGCACTTTC CGAGAGCTTG 
CTGGAAAGCG AACTGTTCGG CCACGAGAAA GGCTCATTTA CCGGTGCCGT TGGGCGCAAG 
TTGGGAAAAT TTGAACAGGC GCATCAGGGG ACGATTTTTC TTGATGAAGT GGGCGAAATG 
AGCCCGGGAG TACAGGCCAA ATTTCTGCGA GTGCTGGAAG GACATCCGTT TGAACGGGTC 
GGTGGCGGCG ACCCGGTGCA TGCCGATGTT CGCGTTGTGG CGGCGACGAA TCGGGATCTG 
GAGAAAGCTG TTTCCGAAGG AACCTTCCGT CAGGATCTTT ACTTCCGGTT GCAGGTGGTC 
GAATTGGTGG TGGAGCCACT CCGTCGGAGA AAGCTGGATA TTCCGCTGCT CGCGAATTAT 
TTCCTGAACA GGTTCGCTCG AAAAATGGCA CGGAATATGG TCGGGTTTAC GCCTGGAGCG 
ATGCAGGCAC TGATTGAATA CGACTGGCCC GGGAACGTGA GAGAACTACA GCATACCATC 
GAGCGGGCAG TGATCCTTTG TCCCCATGAG GCGGTTGGTC AGGCCGATCT GCATCTTTCG 
GCACTTGGGA CAACCGGCAA ATCTGTGGAG CCTACGCGCG ACATCTCGAC AAGGCAGACT 
TTTGAGGCCT TGCCCCTGGA GATCGTTGAG CAGCAGCACA TTCTGGCCAC ATTAGAATGG 
ACAGGATGGA ACAAGTCTCA GGCTGCTCAG ATCTTGGGAA TTGAACGCTC GACACTGGAT 
CGAAAGCTGA AGCGCTACGA TGTGGAGAGG CCTCGGGAAA GAAACTGA 

 

Protein sequence

MSQEVITKAD PAYLVVRTGV KRGDVYRLPH NQVTTIGRAT TCRIVVQDEI CSRNHCELFF 
DVNCWRLRDC GSRNGTKLRG ERISGDVELK FGQSFQIGST IFGLAGSLTQ RWDDDDGLDE 
PIESDTVDAL RERHESDSNP EILHRRRQSR FRQPVDAAAR DKTSLELSRL YRLALEMGSA 
TTAQGLSEIV LEGLLNASSA TIGAILLMSS SLAKNSGGND QLSVVAYRAQ NHQPYHPVSD 
SLSQIVLKDQ EAVLARDISS DDRFLDRDSL GEIEAQSVIC APVRTAEKVY GLIHLYSTDN 
VSQLEVDDLE FTLAVADQMA AGLEQLQRVE KLQAGLQRAE VENQTLREQL RSEMDLIGES 
PAMQQLKNRI ARIAPTDATA LIRGESGSGK ELIARAIHLH SNRRGGPFIT MNCAALSESL 
LESELFGHEK GSFTGAVGRK LGKFEQAHQG TIFLDEVGEM SPGVQAKFLR VLEGHPFERV 
GGGDPVHADV RVVAATNRDL EKAVSEGTFR QDLYFRLQVV ELVVEPLRRR KLDIPLLANY 
FLNRFARKMA RNMVGFTPGA MQALIEYDWP GNVRELQHTI ERAVILCPHE AVGQADLHLS 
ALGTTGKSVE PTRDISTRQT FEALPLEIVE QQHILATLEW TGWNKSQAAQ ILGIERSTLD 
RKLKRYDVER PRERN