| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1408 |
|---|
| Symbol | |
|---|
| ID | 9138103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 1796754 |
|---|
| End bp | 1799033 |
|---|
| Gene Length | 2280 bp |
|---|
| Protein Length | 759 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_003629441 |
|---|
| Protein GI | 296121663 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTTGA CTCGTGAAAC CTTTGATACG CGCAAGAGTT CTCTAGAGCT ACCTAGAACA
TCATCTGAAC CATCGGGCAG CCTGGCCGGT GATGTTCAAA GCAGTTATCG CCTCTGGGTA
TGGGTGCTAC TCATAGTTGT TGCGACGATT TTCGCTCATG GCCAGGGGTT GGCTTGCGGC
TACATCTGGG ATGATGACGC TTATGTTGAA CAGAACAAGA CTTTGCGAAC ATGGCAGGGG
TTGTGGCTCA TCTGGAGCAG TCCCGAGAGT ACACCACAGT ACTATCCGCT GGTTCACACA
ACCTTCTGGA TCGAGTACCA CCTGTGGGGT TTATGGCCAG TCGGCTACCA CGCAACGAAC
ATTTTCCTCC ATGCCATCAC CAGTGTTCTG ATTGGCCGCC TGCTGGTTCG TTTGCAAGTA
CCGGGTGCTT GGTTGATTGC GTTACTCTTT GCTGTCCATC CGCTGCATGT AGAATCGGTG
GCCTGGATCA CCGAACGGAA GAATGTGCTT TCGGGACTGT TCTATTTCCT AGCAGCAACA
CCACTGCTTG AGTGCCTGGG GGTGCTTCCC AAGAAAAAGG ACGTCACGCG ACAACAAGTG
CCGATCGATT CTGGAGTCGA ATCTTTCTGG AAGAAATGGA TGCTGGCTCT GGTCCTGTTT
CTGGCAGCAT TGCTCAGCAA GACGGTGACA TGCACACTTC CTGCCGCAGC ACTGCTCGTG
GCGTGGGGAG TTCGCGGCAG GCTGACCTGG CGGGATGTGA AAGTTACTGC ACCGTTCTTT
GTGCTGGGGA TTTCCATGGG CATACTCACG GCTTATCTGG AAGTGACCCA TGTGGGCGCA
ACGTTCGAAT ATGTGCCTTT GAGTTTCTGG GATCGACTTG TCCTCGCAGG CCGAATTCCC
TGGTTCTATG CATTTCAGAT TGTGTGGCCG CAAACGCTGA TTTTCATTTA CCCCAAGTGG
TCCATCGATG CCTCCCAGCC CCTTCAATGG CTGTACCCTG TGGCCACGCT GGGAGTTTTG
CTCGGCACGT TACTTTTTAG AAGACAACTT GGCCGAGGAA CGTTTGTCGG AATTGCGTAC
TTTATTGGCA CGCTGTTTCC GGCGCTAGGC TTTTTCAATG TTTACCCCAT GAGATTCTCT
TATGTTGCCG ATCACTTCGC CTATCTGGCG AGCTTAGGGA TCATGGCTTT GGGAGGTGCC
GGCTTAACAC TTGCCTGGCA AGCAGCTGCG AGACGCTTCC AATGGCCGAG CGTCGTGCCC
CTGCTGGGGA TGGGATTGAT CGTGATGTTA CTCGCGTTCA TTTCCCGTTC GCAGACCGAG
ATCTACAAGG ATGTCTGGAC ATTGTGGAAT GCGACCGTCC AAGCCAATCC GAATGCGACT
GTCGCACAGG CCAATCTGGG AAAATTGTTG CTGCAAAGAG GTGACATTCA GATCGCTCTG
GTGCATATTG AAGAAGCTTA CCGGCAGGAT CCCATCCTGG ACACGAATCT GCTCAACTGG
ATGACAGCGA AGATCCGGCT TCAGCAGTTT TCGGACGTCC GTGATAAGTG CGACGAACTC
AACAAACGTC TTGACCCACA TGCTGAGTTC CATCGCTTGA TGGCCATGAT GTTCCTGGGT
CTCAATGAGC CGAGTCGAGC TGAGAAGACC TTTGCGGAGG GAGTCGCACG CTTTCCAGAA
GATACTTCGC TGGCGGGCGA TTACGGTGCG TTCCTGATCC GGCAAGGCAA GTTTTCAGAG
GCCGAGTCGC AACTTCGCAA AGCGACGGCG ATTGAACCAT TGAATGGGCA GTCGTGGTCG
GATCTGGGGA TTTGTCTGAT GCAAGTCAAC AGACCCGGGG AGGCACTGGA AGCGTTTCAG
ATGGCCACTC AGAAATCGCC TCTCATGGCC GAAGGTTGGA AGAATCTTGC TCAGTGGTAC
TTGCAGCATG GCCAGCCCGG CAGATCACTG GAGACGATGC GGCTCGCCCA TCAGAAGCTC
CCGCTCGAAC TTTCAATCGT TGAGGAGTAT GCATGGCAAC TGACCCATGG AGAGATTCCT
GCAGAGCAGG ATGCTGCTTT GGCCAGGCTG ATTGTAAATC AGGCATTGGC TGCACCTGGA
GCGGGGTCAC AACTTAAAAC TGGCGGGCTG CCTACGTTGC TGAGATTAGC GCAGGTGTTT
CTCGCATCTG GTGACACGAT CGCTGCGCGG CAACTCGTCG ATCGATATTT GAAGTTACTG
CCGGAAAATG ATGCAGAACG ACTCACAGTC ATGGAATTAC AGAAAAAGTT GATGCAGTGA
|
|---|
| Protein sequence | MTLTRETFDT RKSSLELPRT SSEPSGSLAG DVQSSYRLWV WVLLIVVATI FAHGQGLACG
YIWDDDAYVE QNKTLRTWQG LWLIWSSPES TPQYYPLVHT TFWIEYHLWG LWPVGYHATN
IFLHAITSVL IGRLLVRLQV PGAWLIALLF AVHPLHVESV AWITERKNVL SGLFYFLAAT
PLLECLGVLP KKKDVTRQQV PIDSGVESFW KKWMLALVLF LAALLSKTVT CTLPAAALLV
AWGVRGRLTW RDVKVTAPFF VLGISMGILT AYLEVTHVGA TFEYVPLSFW DRLVLAGRIP
WFYAFQIVWP QTLIFIYPKW SIDASQPLQW LYPVATLGVL LGTLLFRRQL GRGTFVGIAY
FIGTLFPALG FFNVYPMRFS YVADHFAYLA SLGIMALGGA GLTLAWQAAA RRFQWPSVVP
LLGMGLIVML LAFISRSQTE IYKDVWTLWN ATVQANPNAT VAQANLGKLL LQRGDIQIAL
VHIEEAYRQD PILDTNLLNW MTAKIRLQQF SDVRDKCDEL NKRLDPHAEF HRLMAMMFLG
LNEPSRAEKT FAEGVARFPE DTSLAGDYGA FLIRQGKFSE AESQLRKATA IEPLNGQSWS
DLGICLMQVN RPGEALEAFQ MATQKSPLMA EGWKNLAQWY LQHGQPGRSL ETMRLAHQKL
PLELSIVEEY AWQLTHGEIP AEQDAALARL IVNQALAAPG AGSQLKTGGL PTLLRLAQVF
LASGDTIAAR QLVDRYLKLL PENDAERLTV MELQKKLMQ
|
|---|
| |