| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plim_1162 |
|---|
| Symbol | |
|---|
| ID | 9137850 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Planctomyces limnophilus DSM 3776 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_014148 |
|---|
| Strand | - |
|---|
| Start bp | 1486591 |
|---|
| End bp | 1487352 |
|---|
| Gene Length | 762 bp |
|---|
| Protein Length | 253 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | |
|---|
| Product | protein of unknown function DUF1080 |
|---|
| Protein accession | YP_003629196 |
|---|
| Protein GI | 296121418 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCAT CGAATCGACC CACAATGCAC TTTCTTACGG CGTCTCTGAG CACTCAAGTA
GCCGTCCTGC TCTTCATTCT CGCCTGTGGT GGCTGTGCTC AGAATTCTCC TCCTGAAAAG
CCTGAACGCA CTCAGTCTGC GGAAACTCTC CCCAAAGCTT CGCCTTCTCA GCAATTGCCC
GCACCAGTCA TCGAACTGGA ACCTGACGAG CAGCGACTCG CCTTAGCCGA TTTTCTCACC
TTCCCCGAAG CCAGCGACGA TGTCGCTACC AGTGGTTGGA CTGAAGAAGG CGTCATTATT
CGCGGCACAG GCACCCCCAA AGGTTACCTC TACACGCAGA AGACCTTTGA AAATTTTCGA
CTGCGGTACG ACCTGCGATT TCCTGCCGCT TTGTTGTCAT CCGCCTCACC ACTCAAAGAA
AACACAGGCG TTCTCGTCTA TATCACGGGC GATCAGAAGG TCTGGCCCCT CTCGATGGAA
GTGCAGGGAA AGTATGTCGA TCTGGGCTCC GTCAAAGAAA ATGGCGGTGC TGCCAAAGCG
ACACAAACCT TCGATAAGGA ACTGCAGCAG AAGGTGATTG GACCAGCCCA TGAGTGGAAT
TCGCTGGAGG TCATTTCTCA AGGCGGCGCT CTGACGGTGC TGCTCAATGG CGAAAAGATC
ACCACGTCCG AGCCCAATTT TCTCAGCAGT GGGCCGATTG GATTGCAGGC GGAAGGTTTT
CCTGTCGAGT TCGCCAATCT CCGCATTCTC GTGTTGCCAT AA
|
|---|
| Protein sequence | MPPSNRPTMH FLTASLSTQV AVLLFILACG GCAQNSPPEK PERTQSAETL PKASPSQQLP
APVIELEPDE QRLALADFLT FPEASDDVAT SGWTEEGVII RGTGTPKGYL YTQKTFENFR
LRYDLRFPAA LLSSASPLKE NTGVLVYITG DQKVWPLSME VQGKYVDLGS VKENGGAAKA
TQTFDKELQQ KVIGPAHEWN SLEVISQGGA LTVLLNGEKI TTSEPNFLSS GPIGLQAEGF
PVEFANLRIL VLP
|
|---|
| |