Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_0546 |
Symbol | |
ID | 9137224 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | + |
Start bp | 682757 |
End bp | 684046 |
Gene Length | 1290 bp |
Protein Length | 429 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | RNA polymerase sigma factor, sigma-70 family |
Protein accession | YP_003628593 |
Protein GI | 296120815 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.289005 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTGGTT CACAAAATGC TGCTGATTAT CGCGTGACTT CCGGGGAATG GCATCTGGCG GTCGAACGCG TGGCCCGCGA GAGCTATGGC CGGCTGATTG CCATCATCTG TCGGAAGACG AATGACCTGG CCGCTGCAGA AGATGCCCTG GCGAGCGCTC TGCTGACCGC ACTGGAAACG TGGCCACACA GCGGGTTACC AGTCGATCCT GAAGCATGGC TGATTCGAGT CGCGCAGCGG AAATGGCTCG ATGAGACCAG GCATACGCAA CTGCGAGATC GTGTGCTCCG CGAAGTCATC AGCCCGGTCA TGGCTCTCCT GCAGGAGAAA TCGGCAATGC ACTCGACCGA AGTTCCTCTG CAGGATGATC GGCTGGCCAT GATGTTTGCC TGCGCTCATC CCGCGATCGA ACCTTCGATG AGAACGCCAC TCATTTTGCA GGCCGTTCTG GGAATCGATG CGAGCCGAAT TGCTTCGGCG TTTCTGATCA ATCCGCAGAC GATGAGTCAG CGTCTCGTCC GGGTAAAAAA CAAACTGAAA GTGGCAAAAA TTCCCTTTGA ATTGCCACCT GAGCACGAAT GGCGGGATCG ACTGGATGAT GTTCTCAGTG CCATCTATGC GGCCTACGGA ACGGCCTTCG ATGAAACGAT GTCTGGTCAG TCTGGTACCC GAGCTCTCGC CAGAGAAGCC ATCTGGCTGG CACAAGTGGT TCAAAAAATA TTACCTCAAT CTGCCGAAGC GGCAGGGCTG TATGCACTCC TGCTCTTCTG TGAGGCGCGG CGTGACGCCA GGCGTGGAAG CGAAGACCAG TATGTTCCGC TGCTCGAACA ATCGCCGGAA CTCTGGGACG GGGCAATGCT CGATGAAGCC GAAGCCACTC TAAGTGCCGC TTTTCAACAA CAAGCCCCGG GTCGATTTCA ATGGGAAGCG GCGATTCAAT CGGCCCATTG TGCCCGGCGG CACTTTACTT CGGGGCAGGC GGTTGTGGAC TGGCCAGCGA TTGCCGTGCT CTATGAGGGA TTGCTGAGCT TTGCACCCTC TCTGGGTGCG AGAGTGGCTC AAGTCGGGGC TTTACTGCAA GCGAACCAGA TGGAACAGGC GAAGGAACGA TTCGCTCTGA TTCCGCGCGA GGCATGCAGA ACTTATCAGC CCTGGTGGGT GGTTTCAGCG GAACTCGCTC GACGGCAAGG CCAAAACAGT CAGGCCCACA GTGATCTCAT GATCGCCATG GGCCTGACGG AAGATGCCGC AGTGAAAGAT TTTCTGGCCA GGAAGGCCGC CAATCTCTAA
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Protein sequence | MSGSQNAADY RVTSGEWHLA VERVARESYG RLIAIICRKT NDLAAAEDAL ASALLTALET WPHSGLPVDP EAWLIRVAQR KWLDETRHTQ LRDRVLREVI SPVMALLQEK SAMHSTEVPL QDDRLAMMFA CAHPAIEPSM RTPLILQAVL GIDASRIASA FLINPQTMSQ RLVRVKNKLK VAKIPFELPP EHEWRDRLDD VLSAIYAAYG TAFDETMSGQ SGTRALAREA IWLAQVVQKI LPQSAEAAGL YALLLFCEAR RDARRGSEDQ YVPLLEQSPE LWDGAMLDEA EATLSAAFQQ QAPGRFQWEA AIQSAHCARR HFTSGQAVVD WPAIAVLYEG LLSFAPSLGA RVAQVGALLQ ANQMEQAKER FALIPREACR TYQPWWVVSA ELARRQGQNS QAHSDLMIAM GLTEDAAVKD FLARKAANL
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