Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plim_0245 |
Symbol | |
ID | 9136900 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Planctomyces limnophilus DSM 3776 |
Kingdom | Bacteria |
Replicon accession | NC_014148 |
Strand | - |
Start bp | 315304 |
End bp | 316470 |
Gene Length | 1167 bp |
Protein Length | 388 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | |
Product | tRNA pseudouridine synthase D TruD |
Protein accession | YP_003628296 |
Protein GI | 296120518 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.107807 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGAAC AGCCAGTCCC ACTGCTTGCT CCCTCTGCCT GGCCGGAGCT GACCAGTCAA ACGGCAGGGG TGGGCGGTGT CTGGAAACAA TCCCCCGAAG ATTTTCTTGT CGAAGAAATC CCGGCTTACC TTCCCTGCGG AGAAGGTGAG CATCTGTTTC TCTGGATCGA GAAGCGAAAT CTTTCGAGTG AAATGCTAGT GGCACAGCTC TCGAAACAGC TCGCCGTTCC CCGCTCAGAA ATTGGCATGG CGGGGTTGAA AGACAGGCAG GCCATTACCA GGCAATGGGT TTCTGTCCCC ACCCGGGCTG AAAAGCTGGT ACCAGCTGTT GAGAGCGATG ATTTACAGGT GCTCGAAGCC AGACGACATC GCAACAAGCT CAAGACGGGC CACTTAAAAG GGAATCGTTT TGTCGCTATT TTGAGGGGCG TTGAACCCGA TCTTTCCAAA ATCGATGCCA TTACCCGGCA ACTGCAGGCT CAAGGCTGCC CAAATTACTT CGGCATGCAG CGATTTGGGC ACCAGCACTC GACGTGGAAG CTGGGCTGGC AACTGCTGCT GGGCCAGATC TCGCCACAAG ATATTCCCGC CCCCAGGCGA AAGTTTCTGC TCCGACTCGC TCTCTCTGCT GTCCAATCCG GGCTGTTTAA CGAGGTGCTG GCTCAGCGAC TGCGGGACGG GCTTTTCTCG ACAGTTCTCT GCGGCGACCT GATGGAAATT CTCCCCGCTG GTGCGAAGTT TCTGGTCACA GATGCCGCTG CTGATCAGCC GCGCTTCGAC TCGTGGGAAA TCTCCACCAC CGGACCCATT TTTGGTGTGC GCATGCGTTC GCCTGGGGGC GAAGTTCATG CTCGCGAACT GGCGATCCTG CAGAAGTTAG TATTGACGAT CGAGCACTTT CAGAAATTCT CCTCGCTGAT GGAAGGAACC CGGCGGCCCT TCCGATTCTT GCCTGCAGGC CTGACCTGCG AATTGTTGCC CGCCAACAGT TCAGATCACG AAACGCCTCG CGGTGACCTC CGCGTTTCCG TCGAACTCCC TGCTGGTGCC TATCTAACGG TTCTGCTGCA CGAGTTTCAG AAGTCGCCCC TGGAAGCAGC GGAGTCTCCC GATTCTGCTG GCAATTCCGA GGATGCCGAC GAGATCGCCT CACAATCGGC AGATTAA
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Protein sequence | MTEQPVPLLA PSAWPELTSQ TAGVGGVWKQ SPEDFLVEEI PAYLPCGEGE HLFLWIEKRN LSSEMLVAQL SKQLAVPRSE IGMAGLKDRQ AITRQWVSVP TRAEKLVPAV ESDDLQVLEA RRHRNKLKTG HLKGNRFVAI LRGVEPDLSK IDAITRQLQA QGCPNYFGMQ RFGHQHSTWK LGWQLLLGQI SPQDIPAPRR KFLLRLALSA VQSGLFNEVL AQRLRDGLFS TVLCGDLMEI LPAGAKFLVT DAAADQPRFD SWEISTTGPI FGVRMRSPGG EVHARELAIL QKLVLTIEHF QKFSSLMEGT RRPFRFLPAG LTCELLPANS SDHETPRGDL RVSVELPAGA YLTVLLHEFQ KSPLEAAESP DSAGNSEDAD EIASQSAD
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