| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3547 |
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| Symbol | |
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| ID | 5453584 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 3790812 |
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| End bp | 3792173 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640879131 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_001414802 |
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| Protein GI | 154253978 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGGCG CAGGTGTCAT CGACAATTTC CTCGGGGTCT TCACCTCCTA CATCAACAGC
GGGTTCGGAC TGCTCGGCGG CGAGGTCGCG TTCATCGCCA CAACGCTGAT CGTCATCGAT
GTGACGCTTG CCGCCCTGTT CTGGAGCTGG GGCGCGGAAG ACGACATCAT CGCCCGGCTG
GTGAAAAAGA CGCTCTTCGT CGGCGTCTTC GCCTATCTCA TCGGCAACTG GAACAACCTC
GCCAAGATCG TCTTCGACTC GTTCGCGGGC CTCGGCCTCA AGGCTTCCGG CACCAGCTTC
ACCGCGCAGG ATCTGATGCG ACCCGGCAAG GTCGCGCAGA CCGGGCTCGA CGCCGCGCGC
CCCTTGCTCG AATCCATCTC CGACCTGATG GGCTGGATCG CGTTCTTCGA GAACTTCATC
CAGATCGCCT GCCTGCTGTT CGCCTGGGCG CTGGTGCTGC TCGCCTTCTT CATCCTCGCG
ATCCAGCTCT TCGTTACCCT GATCGAATTC AAGTTGACGA CGCTGGCGGG CTTCGTCCTC
ATCCCGTTCG GCCTGTTCGG CAAGACCGCC TTCATGGCCG AGCGCGTGCT GGGCAATGTC
GTCTCATCCG GCATCAAGGT GCTGGTGCTC GCCGTCATCA TCGGCATCGG CTCAACGCTG
TTCAGCCAGT TTACGGCCGG CTTCGGCGGC GCAACGCCCA CAATCGACGA CGCCATGGCG
ATTGTTCTTG CCGCGCTATC GCTGCTCGGG CTCGGCATCT TCGGCCCCGG CATTGCTGCC
GGTCTGGTCA GCGGCGGACC ACAACTCGGC GCCGGTGCGG CGGTTGGCAC CGGGCTTGCC
GTCGGCGGTG CCGCGCTCGC AGCTGGTGGC GCGGCAGGCC TTGCCATAAA GGGAGGAGCG
GCTGCGATGT CCGGCGGTGC TGCTGCCGTG CGGGGCGGTG CGGCAGCGGC AGGCGGAGCC
GCCGCGGCCT ACAGTGTCGG CTCGCTCGGC CAGTCCGGCG CAGCCGGTGT CGCCTCTGGT
CTTGGCGGTG TCGCCCGCGC GGCCGGAGCA GCCGCCGTGT CGCCCCTGAG ACGCGCGACG
GCGCGCGTCG CCGAAGGCGT CAAGTCCAGC TTCTCCGAAG GTGCGAAGGC AGGCTTCGGC
GCAACGGGCG GTTCCTCGAC CATGAGCACG ATACCCGGCT CAGGCTCCGC AGGCGAAGCC
GCCGCCGCAG CGCCCGGCGA CGGTCCGCCC GACTGGGCCA AGCGCATGAA GCGCCATCAG
TCCCTCAGCC ACGGAGCCAC CCTCGCAGCG CACGCCGTCA AATCCGGCGA CAGCCATGGC
GGCGGCTCTT CCGTCAATCT CTCCGAAAGT AACCGCTCAT GA
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| Protein sequence | MGGAGVIDNF LGVFTSYINS GFGLLGGEVA FIATTLIVID VTLAALFWSW GAEDDIIARL
VKKTLFVGVF AYLIGNWNNL AKIVFDSFAG LGLKASGTSF TAQDLMRPGK VAQTGLDAAR
PLLESISDLM GWIAFFENFI QIACLLFAWA LVLLAFFILA IQLFVTLIEF KLTTLAGFVL
IPFGLFGKTA FMAERVLGNV VSSGIKVLVL AVIIGIGSTL FSQFTAGFGG ATPTIDDAMA
IVLAALSLLG LGIFGPGIAA GLVSGGPQLG AGAAVGTGLA VGGAALAAGG AAGLAIKGGA
AAMSGGAAAV RGGAAAAGGA AAAYSVGSLG QSGAAGVASG LGGVARAAGA AAVSPLRRAT
ARVAEGVKSS FSEGAKAGFG ATGGSSTMST IPGSGSAGEA AAAAPGDGPP DWAKRMKRHQ
SLSHGATLAA HAVKSGDSHG GGSSVNLSES NRS
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