Gene Plav_3472 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPlav_3472 
Symbol 
ID5453605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameParvibaculum lavamentivorans DS-1 
KingdomBacteria 
Replicon accessionNC_009719 
Strand
Start bp3717260 
End bp3717913 
Gene Length654 bp 
Protein Length217 aa 
Translation table11 
GC content65% 
IMG OID640879057 
Producthypothetical protein 
Protein accessionYP_001414728 
Protein GI154253904 
COG category[S] Function unknown 
COG ID[COG2442] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones39 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones55 
Fosmid unclonability p-value0.84444 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGCAG TCGCGGAAAT GCTGAAGGTC AGCGAGGTCG CCGTTGTCTC GCGCGTGAGC 
CTGCGCGACG TCAATCGTGC TCTCGACGAA CACATCCTGC CGGACGCCTT CGTCTCGTTC
GACAATGGCC GTTACGTCCT GGCCGGCGCC TGTTCGCTCA TCACCTTCTA TTTCGCGAGC
GCCCGGCGCC TGACCTCGGA AGAGCGCCTG TCGGCCATCA GGACCGCAGA GCCTCGGCTT
GCGCGGTCCC GCGCCCTGCC TTGGGCTGCG CTGTTGCGTG AGGATTGGAC CGTCCGCGAC
GATTTCCTGA CCATCGACCT GCTGCCCTTC ATGAAGGGCG CGAGCGAGCG GCTGGACGAT
CTCGCCACCG CGCGGGAGAT GGTCACGACC TCACCCGACA TTCTCGGCGG CACACCCGTC
ATTCGGGGCA CCCGTGTTCC GGTCTATGAT GTCGCGGCAT CCGTAGCCGC CGGCCATTCG
ACGGAGCGCA TCCTCGCGAC CTGGCCCAGC CTAGATACCG AAAAAGTCAG GCTTGCCACA
ATCTACGCGG AGGCAAACCC GCTGCGCGGT CGCCCACGCG CTCCCGCCGA TCTTTGCGAA
GGCTCGGTCA TTATCACGGA TCGCCGCATT CCTCGAGCCA GGAAGGCGGG ATGA
 
Protein sequence
MPAVAEMLKV SEVAVVSRVS LRDVNRALDE HILPDAFVSF DNGRYVLAGA CSLITFYFAS 
ARRLTSEERL SAIRTAEPRL ARSRALPWAA LLREDWTVRD DFLTIDLLPF MKGASERLDD
LATAREMVTT SPDILGGTPV IRGTRVPVYD VAASVAAGHS TERILATWPS LDTEKVRLAT
IYAEANPLRG RPRAPADLCE GSVIITDRRI PRARKAG