| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_3466 |
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| Symbol | |
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| ID | 5455209 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 3709966 |
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| End bp | 3711900 |
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| Gene Length | 1935 bp |
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| Protein Length | 644 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640879051 |
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| Product | integrase family protein |
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| Protein accession | YP_001414722 |
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| Protein GI | 154253898 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0582] Integrase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGGCAC TCTCTGATCT GACTGTGCGG CAAGCCAAGG CCGCTGACAA AACCTACAGC
CTCCCCGATA CCGATGGCCT CGGCCTGGTG GTCGCCCCTA CCGGCGGCAA ATCGTGGCAC
CTGCGCTACT ACTGGCTCGG CAAGCAAAAG CGCATCTCCC TGGGCAACTA CCCCGAGATC
GGCCTGCGTG AAGCGCGTAC CTTGCGCGAC GAAGCCCGCG CACTCTTGGC TAGGGGCATC
AACCCTCACA CCGACCGCAA GCAGAAACGC CATGCCGTGA AGCTGGCGGC CGACTACACG
TTCAAGGCGG TCTTCGATGC CTGGGTCGAG CATCGGCGCA AGGAACTCAA GGAAGGCCGT
CAAAGCACCC TCTCGCAGAT CCTGCGGATT TTCGGCAAGG ACGTGCTGCC CGCCCTCGGG
AAGATGTCGA TCTACGACAT TCGCCGGCCC CAGCTTCTGG GCGTCCTGGC AAGAATCGAG
GAACGCAAGG CTTTCACCAC GGCAGAAAAG GTCCGCACCT GGTTGAGCCA GTTGTTCCGC
TATGCCCTCG TGATCGTCGA GGGGCTGGAG GCCAATCCGG CTTCTGACCT GGATGTGGTG
GCGGAGCCCA AGCCTCCGGT GAACCACAAC CCGTACTTGC ATTTGCCCGA GCTGCCGGAA
TTCCTTCAGA AGCTCCGGCT CTACAACCCG CGTGGCTGGC AGACCCAGCT CGGCATCCGG
CTGCTGTTCC TGACCGGGGT GCGAACCGGC GAGCTGCGGC TGGCGACCCC GGATCAGTTC
GACCTGGACC GCGGCCTCTG GATCATTCCG CCCCAGATCG TCAAGCAGCT TCAGGATGAG
ATGCGCAAGG CCGGCAAGCG CCCCCAGGAT GTGCCGCCCT ACATCGTACC GCTGTCCCTT
CAAGCCATCG AGATCGTGAG CTACCTTCTG GGGGTGATAC GGCCGGCCCA GCGCCACCTG
CTGGCGCACC GCAGCGAACT CAAGAAGCGC ATCAGCGAGA ACACCCTCAA TGCCGCCTTG
AAGCGGATGG GCTACGAGGA CCAACTGACC GGCCACGGCA TCCGGGGAAC GATTTCGACG
GCGCTCAACG AGATCGGCTA CCCCAAGATT TGGGTGGACG CGCAGCTCTC GCACTCCGAC
CCGAACAAGG TGAGTTCGGC TTACAACCAT GCCAAGTACG TTGAGCCGCG CCGCCGGATG
ATGCAGGACT GGGCGGATCG CCTCGACCTG CTCGAACAGG GCCAGGTGGA GGCGGCCAGC
GCGCACCTCA CCATTCACAT CGAGGGCGTG CCGGCCATGG CAGAGGAGGA CAAGCCCGAC
GCCATCGTTG CAGCGTCCTC TGCGGCACCC GTTCCGTCGA TGGTGACCGC TCCCATCGTC
GTGACGCCGA ACGACGGGAG CATCACGTTC CAGCGGCTGT CGCAGGTGCC GCCGCCTCCG
ACGCATGCGC CAGAACCGGA AGTATCTGCC ATCCAGCGCG AGCGCGAGGA AATGCTGGCC
ATCTATGAAT CGCCGAGCAG CCTGCCGGTC CCCCTGTTCG GCAAGTTGGC CGGGAAGTCC
AAAGACCAGA TCAACCGCGA GTTGAAGGCC GGCAAACTGC TATCCGTCAG CTTGGGCAAC
CGGGGCCAGC GAGTTCCCGA TTGGCAACTG GTGCCGCTCA AGCACAAGCT GGCCCAGGTG
CTCATGCGCC AGTGTCCGCA AGCGGATTCG TGGGAGCTTT ACCGCATGCT GACCCGGCCA
CACCCGGACC TGGGCGATCG CGCGGCCATC GATTTGGTGA CGCCAAGCAA TCTGGGCATG
GTGGTCCAGG TCATCGCAAG CGGCCAGTTC CATGCGAATG CGCCAGAGAC AGTCCCACCG
CGGCCTATCC CAGAGGAGGT GCGGCAGAGC GTTCGCCGAA TGGTGGACAG CGCCGTGGTT
CTGGACGGCG CATAG
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| Protein sequence | MMALSDLTVR QAKAADKTYS LPDTDGLGLV VAPTGGKSWH LRYYWLGKQK RISLGNYPEI
GLREARTLRD EARALLARGI NPHTDRKQKR HAVKLAADYT FKAVFDAWVE HRRKELKEGR
QSTLSQILRI FGKDVLPALG KMSIYDIRRP QLLGVLARIE ERKAFTTAEK VRTWLSQLFR
YALVIVEGLE ANPASDLDVV AEPKPPVNHN PYLHLPELPE FLQKLRLYNP RGWQTQLGIR
LLFLTGVRTG ELRLATPDQF DLDRGLWIIP PQIVKQLQDE MRKAGKRPQD VPPYIVPLSL
QAIEIVSYLL GVIRPAQRHL LAHRSELKKR ISENTLNAAL KRMGYEDQLT GHGIRGTIST
ALNEIGYPKI WVDAQLSHSD PNKVSSAYNH AKYVEPRRRM MQDWADRLDL LEQGQVEAAS
AHLTIHIEGV PAMAEEDKPD AIVAASSAAP VPSMVTAPIV VTPNDGSITF QRLSQVPPPP
THAPEPEVSA IQREREEMLA IYESPSSLPV PLFGKLAGKS KDQINRELKA GKLLSVSLGN
RGQRVPDWQL VPLKHKLAQV LMRQCPQADS WELYRMLTRP HPDLGDRAAI DLVTPSNLGM
VVQVIASGQF HANAPETVPP RPIPEEVRQS VRRMVDSAVV LDGA
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