Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_3440 |
Symbol | |
ID | 5456509 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | - |
Start bp | 3675607 |
End bp | 3677208 |
Gene Length | 1602 bp |
Protein Length | 533 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 640879027 |
Product | integrase catalytic region |
Protein accession | YP_001414698 |
Protein GI | 154253874 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.623196 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 0.257291 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTATTCCT ACGAAGATCG AATTCGAGCG GTTGAGCTCT ATATCAAGCT GGGCAGGCGC GTCAGGCCCA CGATCCGCCA GCTGGGTTAT CCAACAAAGA ATTCTCTGAA GGGCTGGTAC AACGAATACC AGCAGAAGCT CGACTTGCCA GCGGGCTATG CGGGCCGGAG ACCCAAGTTC TCGAAGGAAC AGAAGGCGGC AGCTATCGAG CATTACCTCG CTCACGACCG CTGCATTGCG GCCACCATGA GGGCACTGGG CTACCCCTGC AGAGGGACGC TAACCGCTTG GATTCGCGAG GCCCTTCCTG AAGCCAGAAG GCGTGTCGTC GGCAGTACGG TGCGACGAAG GTATTCCGGG GAGCTGATGC AAGCAGGAGT CATGGAACTC TGCACTCGCG AGGAAAGTGC CCAGGCTGTA GCCGACAAGT TCGGCGTGTG CCGGCCAACG CTGTACAACT GGAAGAACCA ACTTCTGGGA CGTGAAGCAC CCGCATCCAT GAAACGTACC AATCCATCTT CGCCTTCGCA GGAGCGCGAT GAGCTCGAGC GCCAGGTTGA GTCCCTGCGC CGCGAAGTCA GGCAACTGCG CCTCGAGCAG GATCTTTTGA ACAAGGCCAA CGAACTGTTA AAAAAAGGCC TGGGCGTCGA CCTGCAGCTC CTGTCCAACC GGGAGAAGAC ACTGCTGATT GACGCCCTCA GGGAGCACTA TGGCCTGCCA GAGCTCCTTG CACAGTTGGA TCTTGCGCGC AGTTCGTATT TCTATCACCG GGCCCGCGCA GCGGTGGGCG ACAAGTACCT GAAGGTTCGG CAATCCATCA CCGACATCTT TGAGTCGAAC CACCGCTGCT ATGGCTACCG CAGGCTGCAG GCATCTCTGA CCAGGCAGGA CGTCACGATC TCAGAGAAGG TTGTACAGCG GTTGATGAAG CAGGAAAGCC TGGTTGTTCC AAGGCCCAGA AAGCGCCGCT ATGCGTCTTA CCTTGGCGAA ATCAGCCCAG CGCCTGAGAA CCTCATCGAT CGCGACTTCC AGGCCGCGGT GCCCAACGCG AAATGGCTCA CGGACATCAC GGAGTTCCAG ATCCCGGCTG GCAAGGTGTA CCTCTCGCCC ATCATCGACT GCTTCGACGG AATGGTCGTC AGCTGGACCA TTGGGACCAG TCCGGACGCG GAGTTGGTCA ACACGATGCT GGACGCAGCC ATCGAGACGT TGGCCGACAC GGCTGATCGT CCCGTGGTCC ACTCCGATCG GGGCGGCCAC TACCGCTGGC CGGGTTGGCT CTCAAGAATG AGCAACGCGA ACTTCATCCG CTCGATGTCT CGCAAAGCAT GCTCACCTGA TAACGCTGCC TGCGAAGGCT TCTTCGGTCG GCTGAAGAAT GAGCTGTTCT ATCCTCGGGA CTGGAAGACC GCCACCATTG AGCAGTTCGT CGAGGCGGTC GACTCGTACA TCCGCTGGTA CAACGAGAAG CGGATCAAGA TCGCACCCGT ATTCTTGTCA GCGGTGACAG CGCAGGCGGC GGCCTCGCGG CGGCGCTGGC ATTGCTCGCG CGCGATAGGG GTAAGTATGC GATCGCCTAC CAGCATCTGG TCTTCCCAAT GA
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Protein sequence | MYSYEDRIRA VELYIKLGRR VRPTIRQLGY PTKNSLKGWY NEYQQKLDLP AGYAGRRPKF SKEQKAAAIE HYLAHDRCIA ATMRALGYPC RGTLTAWIRE ALPEARRRVV GSTVRRRYSG ELMQAGVMEL CTREESAQAV ADKFGVCRPT LYNWKNQLLG REAPASMKRT NPSSPSQERD ELERQVESLR REVRQLRLEQ DLLNKANELL KKGLGVDLQL LSNREKTLLI DALREHYGLP ELLAQLDLAR SSYFYHRARA AVGDKYLKVR QSITDIFESN HRCYGYRRLQ ASLTRQDVTI SEKVVQRLMK QESLVVPRPR KRRYASYLGE ISPAPENLID RDFQAAVPNA KWLTDITEFQ IPAGKVYLSP IIDCFDGMVV SWTIGTSPDA ELVNTMLDAA IETLADTADR PVVHSDRGGH YRWPGWLSRM SNANFIRSMS RKACSPDNAA CEGFFGRLKN ELFYPRDWKT ATIEQFVEAV DSYIRWYNEK RIKIAPVFLS AVTAQAAASR RRWHCSRAIG VSMRSPTSIW SSQ
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