| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2977 |
|---|
| Symbol | |
|---|
| ID | 5455910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 3172901 |
|---|
| End bp | 3175438 |
|---|
| Gene Length | 2538 bp |
|---|
| Protein Length | 845 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640878563 |
|---|
| Product | DNA ligase D |
|---|
| Protein accession | YP_001414241 |
|---|
| Protein GI | 154253417 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.246159 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCGCA AGAGTACGTC CAGCCTCGAA ACCTATTGGG CGAAGCGTCA TTTTGACGAA
ACACCTGAAC CTCGCGGCAA GAAAGCGCGG CGCAAGGGCC ATCGCTATTC GATCCAGATG
CATCATACCC GTCGGCTGCA CTACGACCTT CGCCTGGAAC TCGATGGCGT TCTGAAGAGC
TGGGCCATCA CGAAAGGTCC GAGCCTCGAT CCTTCTGTTA AGCGCCTCGC CGTCCGCACA
GAGGATCACC CGGTCGACTA CATCGCCTTT GAGGGAAACA TCCCGGAAGG TCACTACGGC
GCCGGGACGG TGCTTCTATG GGATCGCGGC GAATGGCAAC CGATCGGCGA TCCGCATGAA
GGCCTGAAGA AAGGCAAGCT CGCTTTTGAA ATTCATGGCG AGCGACTGAA AGGACGATGG
GCACTCATCC GTTTCAAGGG CGAACGCGAC CCGAAGCGGG AAAATTGGCT CCTCATAAAG
GAGCGCGACG ATGTCGCAAG CAGCAGCAAA GACCCTGTCG AAGAATACAA GACAAGCGTC
TCTTCTGGTC GCGGCAAAAA GGAAGTCTCG GACGCACCCG ATCGTGTCTG GGAAGACGGC
AAGGCGAAGA AGGCCAAGTC GAAGCGGGTT ACATCGAAGG GCCCGAAACA TCCTTTGCCC
GGCTTTGTCG AACCAGCCCT GGCAACGCTC GTGGATGAGC CACCGTCAGG AGATGATTGG
CTGTTCGAAA TGAAATACGA CGGATACCGC GCTCTCGCCT CTGTAACGGG AGAAGAGGTC
CGCATTTTCA CCCGAAGCGG CCTCGATTGG ACTGAACGCT ACGGCGCACT TGGTTCTGCG
TTTTCTGACC TTGGTCTTGA TGGCGCGCTG ATCGATGGTG AGATCGTCGT CACCGACGCG
AAAGGCCGCT CGAGCTTCAG CGATCTGCAA CGCACATTGA AAGGTGAGAA AAAGGGACGC
TTGTCTTTTT TCGCCTTCGA TCTCCTCCAT TCCGAAGGCG AAGATCTGCG CAAAAGACCG
TTGATCGAAC GCAAGAAGCA GCTGAAAGCA CTGCTCGGTG CGGCCGGGAA GAAAGGCCCC
GTCTATTACA CCGACCATGT GGAAGGTGAG GGAGAGATGA TGCTCGAAGC GCTCTGCACG
CGCGGCTTCG AAGGGGTGAT CGCCAAACGC GCCGACCGGC CGTATCGCTC CGGACGTGGA
AAGTCCTGGC TGAAGATCAA ATGCCAGCAT GAACAGGAGT TCGTCATTGT CGGTTGGTCT
CCCTCGGAGC GCGGCCGGGC ATTCTCCTCG CTCCTGCTGG CTCTTCGGGA GGATGGCGAG
CTACGCTATG CAGGCAGGGT CGGCACAGGC TTTTCCGAGG CCGACCTGAA TGCACTTTCA
AAGCGTTTCG CCTCTTTGGC GCGGCGCACC TCACCGCTCA AGGGCGATGT GCCCGCCGAG
ATCAGGCGCA ACGTGCGTTG GCTGCGGCCC GAACTCGTGG CCCAGATCGG ATTTGCCGAG
TTTACCCATG ACGGCGCCGT GCGGCAGGCG CGCTACTTGG GCTTGCGCGA GGACAAGCCC
GCAAGTGCCG TCACGCGCGA GAGCGCCGTT CCGGTGGAGA AGATCGAAAA AATGACAGCA
ACCGACAAAA CCTCGAAAGA TGCCGACGAC GACGCAGTCA TTGAAGGTGT CCGTATCACT
CATCCGGACC GCATTCTTTT TCCAGAGCAA GGCGTCACCA AACTCGCGCT CGCGCGATAC
ATGCAAAAAG CCGCACCGCT TATGCTGCCG CACCTGGCAA ACCGCCTGCT CAGTCTCGTG
CGTTGCCCGC AGGGACCGCA GAAAAAATGT TTCTTCCAGC GACATGCCGG CTCGAGCCTT
CCCGAAGGCT TCAAGGAACT GCCGGTAAAG GGATCGAAAG AACGGCAGGA CTATCTCTAT
CTGACGGATG CCAAGGGCCT TGTCGCCGCC GCACAAATGG GTGTGCTGGA GCTCCATCTG
TGGGGCTCTC ATATCGACGA TGTCGAACGC CCTGACAGGA TTGTTTTCGA TCTCGATCCG
GACCCCGATC TCCCTTTCGA CACGGTGATC GAAGCCGCGC GGCGAATGCG CAATGTGCTG
GAAGCTCTGG AGCTGCAGAG TTATCCCATG CTTACCGGTG GCAAGGGCGT CCACGTCGTC
GCGCCTTTGG TGCGCCGCCA TGAATGGCCG GTCGTGAAGG CTTTCACGCG TGCGCTCGCT
GAGCGGCTGG AGGCAGACGC CCCGGAGCGT TATGTCGCGA AAATGACCAA ATCAAAGCGC
ACCGGCCGCA TATTCATCGA CTACCTGCGA AATGACCGCT CATCTACCGC CATCGCGCCC
TACTCGCCCC GCGCACGAAA AGGAGCGCCG GTCGCATGGC CGGTAACCTG GGAGGAACTC
GACGAGGCGA ACTCCGGGGG CGACGTGACG ATAGAAACTG CCTTTGCCAA GCGCCGCACC
GATCCATGGA AGGGTTATGG CTCCCTTCGA CAGTCACTCA AGGCATCGGC CTTGCGTGCA
CTCGATGTCG ACGCCTGA
|
|---|
| Protein sequence | MSRKSTSSLE TYWAKRHFDE TPEPRGKKAR RKGHRYSIQM HHTRRLHYDL RLELDGVLKS
WAITKGPSLD PSVKRLAVRT EDHPVDYIAF EGNIPEGHYG AGTVLLWDRG EWQPIGDPHE
GLKKGKLAFE IHGERLKGRW ALIRFKGERD PKRENWLLIK ERDDVASSSK DPVEEYKTSV
SSGRGKKEVS DAPDRVWEDG KAKKAKSKRV TSKGPKHPLP GFVEPALATL VDEPPSGDDW
LFEMKYDGYR ALASVTGEEV RIFTRSGLDW TERYGALGSA FSDLGLDGAL IDGEIVVTDA
KGRSSFSDLQ RTLKGEKKGR LSFFAFDLLH SEGEDLRKRP LIERKKQLKA LLGAAGKKGP
VYYTDHVEGE GEMMLEALCT RGFEGVIAKR ADRPYRSGRG KSWLKIKCQH EQEFVIVGWS
PSERGRAFSS LLLALREDGE LRYAGRVGTG FSEADLNALS KRFASLARRT SPLKGDVPAE
IRRNVRWLRP ELVAQIGFAE FTHDGAVRQA RYLGLREDKP ASAVTRESAV PVEKIEKMTA
TDKTSKDADD DAVIEGVRIT HPDRILFPEQ GVTKLALARY MQKAAPLMLP HLANRLLSLV
RCPQGPQKKC FFQRHAGSSL PEGFKELPVK GSKERQDYLY LTDAKGLVAA AQMGVLELHL
WGSHIDDVER PDRIVFDLDP DPDLPFDTVI EAARRMRNVL EALELQSYPM LTGGKGVHVV
APLVRRHEWP VVKAFTRALA ERLEADAPER YVAKMTKSKR TGRIFIDYLR NDRSSTAIAP
YSPRARKGAP VAWPVTWEEL DEANSGGDVT IETAFAKRRT DPWKGYGSLR QSLKASALRA
LDVDA
|
|---|
| |