| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2796 |
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| Symbol | |
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| ID | 5454326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | - |
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| Start bp | 2998762 |
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| End bp | 3000438 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 640878378 |
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| Product | Serine-type D-Ala-D-Ala carboxypeptidase |
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| Protein accession | YP_001414061 |
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| Protein GI | 154253237 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.204271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 51 |
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| Fosmid unclonability p-value | 0.530411 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGGGT CTGCGCCCAC GAGTTTTGCG CGCATTTCCT TAGGCCGAAG CAAGTCTTCG
GGTGGATTTT GCCTGATTTG CTTGTTTTTA CTCTTCGGCC TTTTGGTCGC CGCGCCGGTA
CAGGCAGCAG CTCCCAAAGA AGCAGCGCTC GTAATCGATG CCTATTCAGG CAAGGTCCTC
TACGCCCGTA GCGCCGACGA ATATCGCTAC CCCGCCTCCC TCACCAAGGT GATGACCCTG
TATCTTCTGT TCGAGAAGCT GCAGGCCGGT GAAGTTACCC TGAAATCCCG CATAACAATG
ACGCCCCGCG GCGCCGGAAT GCCCCCGTCC AAGCTTGGTT TGCGGGCCGG CCAGACACTC
AGTGTCGAAG ACGCCATTCT TGCTCTCGTA ACGCGCTCGG CAAACGACGT CGCGTCGGCC
ACTGGCGCCT TTATCGCCGG CACGGAAGAC GACTTTGCAG CCTTGATGAC GAAGAAGGCG
CGTGCGCTGG GCATGACGCG CACCACATAT AAAAACGCTT CCGGCCTTCC AAACAGCGCC
CAAAAGACGA CGGCACGAGA CCAGGCAACG CTTGCCAAAC GCATTCGGGA AGATTTTCCA
CAGTATTATC ACTATTTCAG CACTGAATAC TTCGCCTGGG GCAAGGCCCG TATCCGCAAC
CACAACCGGC TGCTGGGCGA GTACAAGGGC ACTACCGGCC TGAAAACTGG CTATACAAAC
GCTTCCGGCT TCAACCTCAC AGCCACTGTG GAACGAGACA ATAAGTTCCT GATCGGTGTT
GTGATGGGAG GCAAGCAGGC GAAGCTGCGC GACGCGCACA TGATCGAAAT TCTGGATCGC
GCCATGCCCA GCGCCATCGC GATGAAGAAC GGCAGCACTC TCATGGCTGC AAATACCGGC
CCGGCGCCGA AGCCCGTTCT TCGTCCGCTC GGTCTCGCAC CTGAAGAAGA CCGCGCCGCG
CTTCTTCAAC TGGCTTCCTC CATCGAGGAT CAGAGCGACA CAATACCGGC TCAAGACAAT
TTGTCCGCTG ACCTGCCCGC CCCTGTACAG ACGGTGCTTC TGGCTCCGGC CCCGCAGCAG
CCAGCGACGC CGGCCCAGCC CGTGGTCCTG CCGGTTGCCG CCCCCGAACA GCAAGCCGCA
CCGGCGGCTC CCGTCGATAC TGTCACCGCA TATGCGGTCG CAGCCCTTCG ATCGGCGGAG
GGACCGGTCC GGCAGGCCGG CCGCGAGATT GGCAACTTCC TGGTAGCGCC CGCCAATGCG
AGCGTTAGCC CTGAAGCCGC GGCAAACCCT CTGCTCCGGA CCGCAGCAAA CGACCCGACT
CGGCGCGAGC CTGCCTCCGC TCAGTCATGG CGTGACGGAG ATCCGCTTAT CCCTGAGGGA
ACCTGGATCA TCCAGATAGG CGCTTATGCC GAGCAATCGG ATGCGGTCGA CAGCATCCGC
AAAGCGATGC GCGCTGCCCC GGCAGAACTT GGCGAAGCGG TGCCAGTTAC CATTCCGGTA
AAAACCGCCA ACAACCGCAC TCTCTATCGC TCGCGATTTG GGGGCTTCGA TGGCGAAAAT
GCGGCTCGCA ACGCCTGCGG ACGCCTTGCC CGTCAAGCCA TTCAGTGCAT TCCCATCCCG
CCTTCGAACT GGAGCCTGCC ACAAACGGCC GATGACGCGG AAAGACGGCG CGGCTAA
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| Protein sequence | MQGSAPTSFA RISLGRSKSS GGFCLICLFL LFGLLVAAPV QAAAPKEAAL VIDAYSGKVL
YARSADEYRY PASLTKVMTL YLLFEKLQAG EVTLKSRITM TPRGAGMPPS KLGLRAGQTL
SVEDAILALV TRSANDVASA TGAFIAGTED DFAALMTKKA RALGMTRTTY KNASGLPNSA
QKTTARDQAT LAKRIREDFP QYYHYFSTEY FAWGKARIRN HNRLLGEYKG TTGLKTGYTN
ASGFNLTATV ERDNKFLIGV VMGGKQAKLR DAHMIEILDR AMPSAIAMKN GSTLMAANTG
PAPKPVLRPL GLAPEEDRAA LLQLASSIED QSDTIPAQDN LSADLPAPVQ TVLLAPAPQQ
PATPAQPVVL PVAAPEQQAA PAAPVDTVTA YAVAALRSAE GPVRQAGREI GNFLVAPANA
SVSPEAAANP LLRTAANDPT RREPASAQSW RDGDPLIPEG TWIIQIGAYA EQSDAVDSIR
KAMRAAPAEL GEAVPVTIPV KTANNRTLYR SRFGGFDGEN AARNACGRLA RQAIQCIPIP
PSNWSLPQTA DDAERRRG
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