| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2684 |
|---|
| Symbol | |
|---|
| ID | 5456968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2884766 |
|---|
| End bp | 2885935 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640878261 |
|---|
| Product | acyl-CoA dehydrogenase domain-containing protein |
|---|
| Protein accession | YP_001413949 |
|---|
| Protein GI | 154253125 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTCA GATTCAGCGA GGATCAGCAG GCGATCAGGG ACGCCGTGGC GCGGATCTGC
GTGAAGTATG ACGATGCCTT CTGGCTGAAA CACGACAAGG AAGGCGGCTT CCCGGAGGAT
TTCGTGCGGG ATATCGCGGC TGGCGGCTGG CTTGGGGTCG CGATGCCGGA AGCCTATGGC
GGTTCGGGGC TCGGCGTGAC GGAAGCGGCC ATCGTGGCGC AAACGATTGC CGAATCGGGG
GCGTGTCTTT CGGGTGCTTC CGCCATTCAC ATCAACCTGT TCGGGCCGAT GCCCGTGGTG
GTGTTCGGGA CCGAGGAGCA GAAGCAGAAG AACCTGCCGC CGCTCATCAA GGGCGAGGAC
CGCTGCTGCT TCGGCGTGAC GGAGCCGGAT GCGGGGCTCA ATACCACCGC GATCTCCACC
AAGGCGGAGT GGGACGGCAA GGCCTATGTG GTGCATGGGC GGAAGATGTG GACCTCGACC
GCGCAGACGG CGAACAAGAT ATTGCTGCTG GCGCGGACGA CGCCGAAGGA GAAATGCGCC
AAGGCGACCG AAGGATTGTC ACTCTTTTAT ACGAACCTCG ATCGCGGTGG CGCCACGGAG
GTTCGCGAGA TCGAGAAGAT GGGGCGGAAG GCGGTCGACT CGAACGCGGT GTTCTTCGAT
GGGCTACGGG TGCCGAAGGA AGACCTGATC GGCGAGGAGG GGAAGGGATT TCACTATCTG
CTGCATGGGC TTAACCCGGA GCGGGTGCTG ATCGGCGCGG AGGCGGTGGG TGTCGGCCGG
ATTGCGCTGA AGAAGGCGAC GGATTATGCG CGGGAGCGGG AGGTGTTCGG CCGGCCGATT
GGGCAGAACC AGGCGATCCA GCATCCGCTG GCGCGGTGCT GGGCGGAACT GGAAGCGGCG
AACCTGATGG TGTTCAAGGC GGCGGCGCTT TACGACGCGG GCGAGAATTG CGGGGCGGAG
GCCAATGCGG GGAAATATCT GGCGGCGGAG GCGGGTTTCC GGGCCTGCGA GACGGCGATC
ATGACGCATG GGGGCATGGG CTATGCCAAG GAGTTCCATG TCGAGCGTTA TATGCGCGAA
GTGATGATCG CGCGGATTGC ACCTGTGAGC CGTGAGCTGA TCCTGAGTTT CATTGCCGAG
CGGGTGCTTG GCCTGCCGAA GTCTTATTGA
|
|---|
| Protein sequence | MDFRFSEDQQ AIRDAVARIC VKYDDAFWLK HDKEGGFPED FVRDIAAGGW LGVAMPEAYG
GSGLGVTEAA IVAQTIAESG ACLSGASAIH INLFGPMPVV VFGTEEQKQK NLPPLIKGED
RCCFGVTEPD AGLNTTAIST KAEWDGKAYV VHGRKMWTST AQTANKILLL ARTTPKEKCA
KATEGLSLFY TNLDRGGATE VREIEKMGRK AVDSNAVFFD GLRVPKEDLI GEEGKGFHYL
LHGLNPERVL IGAEAVGVGR IALKKATDYA REREVFGRPI GQNQAIQHPL ARCWAELEAA
NLMVFKAAAL YDAGENCGAE ANAGKYLAAE AGFRACETAI MTHGGMGYAK EFHVERYMRE
VMIARIAPVS RELILSFIAE RVLGLPKSY
|
|---|
| |