| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2403 |
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| Symbol | |
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| ID | 5456923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2590400 |
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| End bp | 2593084 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640877978 |
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| Product | methionine synthase |
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| Protein accession | YP_001413669 |
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| Protein GI | 154252845 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1410] Methionine synthase I, cobalamin-binding domain |
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| TIGRFAM ID | [TIGR00640] methylmalonyl-CoA mutase C-terminal domain
[TIGR02082] 5-methyltetrahydrofolate--homocysteine methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.362073 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.0953455 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCAAT CGACCGCGAA CTTCATCAAC ATTGGCGAAC GCACCAATGT GACGGGATCG
GCCAAGTTCA AGAAACTCAT CGTCGAGGAT CGCTTCGACG AGGCGCTGGA CGTTGCGCGA
CAGCAAGTCG AGAACGGCGC GCAGATCATC GACATCAACA TGGACGAGGG GATGCTCGAT
TCGAAGGCCG CGATGGTGAG GTTCCTGAAC CTCATCGCAT CCGAGCCAGA CATCTCGCGC
GTGCCGATCA TGATCGACTC CTCCAAATGG GACGTCATCG AGGCGGGCCT CAAATGCGTC
CAGGGCAAGG CGGTGGTGAA TTCCATCAGC CTCAAGGAAG GCGAAGAGGC CTTTCTCGAA
CATGCGCGGA AGGTGAAGCG CTACGGCGCC GCCGCCGTCG TCATGGCTTT CGATGAAGAA
GGGCAGGCGG ACACGGCCAA CCGCAAATTC GAAATTTGCG AACGCGCCTA CAAGCTGCTG
ACGGAAGTCG TCGGGTTCCC GCCGGAAGAC ATCATCTTCG ATCCCAATAT ATTCGCGGTC
GCGACGGGTA TAGAGGAGCA TAACAACTAT GCCGTCGAGT TCATCGAGGC GACGCAGCGC
ATCCGCCAGC AATTGCCTTA TGCGCATGTC TCGGGCGGCG TATCGAACGT CTCATTCTCG
TTTCGCGGCA ATGAGCCTGT CCGCGAGGCC ATGCATTCGG TTTTCCTCTA CCACGCCATC
AAGGCGGGCA TGGATATGGG GATCGTCAAT GCAGGCCAGC TTGCGATTTA TGACGACATC
GAACCGTCAT TGCGCGAACT CGTCGAGGAC GTGATCCTGA ACCGCCGGGC GGATGCGACC
GAGCGGCTGC TGGAGGCTGC CGAGCAATAT AAAGGCGGCG CCGGCAAGAA GCGGGAGGAA
GACCTCTCCT GGCGCGAGCG TCCCGTCAAC GAACGGCTCA CTCATTCCCT GGTCAAGGGC
ATCAACGCCT TTATCGAGGA GGATGTGGAA GAGGCGCGGC AGCAGGCGGA GCGCCCCCTG
CACGTCATCG AAGGGCCATT GATGGACGGC ATGAATGTCG TCGGCGATCT CTTCGGCGAG
GGCAAGATGT TTCTGCCGCA GGTGGTGAAG AGCGCCCGCG TCATGAAGCA GGCCGTTGCC
TATCTCATGC CCTACATGGA AAAAGAGAAG GAGCTGACAG GCGCCGCGCA GAAGGAGGCC
GCTGCCACCA TTCTCATGGC GACGGTGAAA GGCGATGTTC ACGACATCGG CAAGAACATC
GTCGGCGTCG TTCTCCAGTG CAACAATTAC GAGGTGATCG ACCTCGGCGT CATGGTGCCC
GCGGACAAGA TTCTCGCCAC GGCGCGCGAA AAGAATGTCG ACATCATCGG CCTGTCCGGC
CTCATCACGC CGAGCCTGGA CGAGATGTGC CATGTTGCGG CGGAGATGGA GCGGGAAGGC
TTCAACATTC CGCTTCTCAT CGGCGGCGCG ACGACAAGCC GTATCCACAC TGCGGTGAAG
ATCAATCCGA ACTACCGGCG CGGCCAGGCG ATTTACGTCA CCGATGCGAG CCGCGCCGTG
GGCGTGGCAT CCAGCCTGAT TTCCGAAACA TCGCGGGAGA AGTTCGTCGC CGATATTCGC
GACGAATACG CGAAGATGGC GACGGCGCAT GCGGGCGCCC GGGAGAAAAA GGACCGGCAA
ACGATCGAAG CCGCGCGGGA AAACAAGCTC AAGATCAAGT GGGACGGCTA CAAGCCAACG
CGTCCCTCGT TCCTCGGCAC CAAGGTGTTC GAGGATTACC CGCTCGAAAA CCTCGTGCCC
TATATCGACT GGACGCCCTT TTTCCAGACT TGGGAGCTGG CCGGCCAGTA CCCGCAAATC
CTCAAGGACG ACAAGGTCGG CGAAGCCGCT CGCGGTCTCT TCGAGGATGC GCAAGCCATG
CTGAAGCAGA TGGTCGAGGA GAAGTGGGTG CGGGCCTCCG CCGTTATCGG CTTCTGGCCG
GCAAATCAGA TCGGAGATGA CGACATCGAG CTTTATGCCG ACGATGCCCG AAAAGAAACG
CTCGATGTGC TGCACTCGCT GCGCCAGCAG ATGAAGCGCA CGTCGGAGCG CGCCAACATG
GCTATCGCCG ATTTCGTTGC GCCGAAGGAA ACCGGCATCG AAGATTATGT CGGCGGCTTT
GCCGTCACCG CCGGTTTTGG CGAGGATGAG GTAGCGAAGC GGTTCGAGCA GGCGAATGAC
GATTACAAGG CGATCCTCTC GAAGGCGCTG GCCGACCGTC TGGCCGAGGC TTTCGCCGAA
CACATGCATG AGCGTGTGCG GCGCGAGTTC TGGGGTTATG CGGCGGAGGA AAAGCTGAGC
AACGAAGATC TCATCGGCGA GAAATATCAG GGCATCCGTC CCGCGCCGGG CTATCCCGCG
CAGCCCGACC ACACGGAAAA GCGCACGCTG TTCAAGCTGC TCGATGCCGA AGCGAAGATC
GGCATGAAGC TGACCGAGAG CTGTGCGATG TGGCCGGGCG CCGCGGTGAG CGGCCTCTAT
TTCAGCCACC CGCAATCCGA ATATTTCGGC GTCGGCAAGA TCGGCAAGGA TCAGGTCGTG
GATTATGCGC GGCGGAAGGG CATGGAGTTG CAGGAATGCG AGCGGTGGCT CGCGCCGATC
CTCAATTACA CGCCGGGTGC CGAGCCTGAG GAAGCGGCGG CCTGA
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| Protein sequence | MTQSTANFIN IGERTNVTGS AKFKKLIVED RFDEALDVAR QQVENGAQII DINMDEGMLD
SKAAMVRFLN LIASEPDISR VPIMIDSSKW DVIEAGLKCV QGKAVVNSIS LKEGEEAFLE
HARKVKRYGA AAVVMAFDEE GQADTANRKF EICERAYKLL TEVVGFPPED IIFDPNIFAV
ATGIEEHNNY AVEFIEATQR IRQQLPYAHV SGGVSNVSFS FRGNEPVREA MHSVFLYHAI
KAGMDMGIVN AGQLAIYDDI EPSLRELVED VILNRRADAT ERLLEAAEQY KGGAGKKREE
DLSWRERPVN ERLTHSLVKG INAFIEEDVE EARQQAERPL HVIEGPLMDG MNVVGDLFGE
GKMFLPQVVK SARVMKQAVA YLMPYMEKEK ELTGAAQKEA AATILMATVK GDVHDIGKNI
VGVVLQCNNY EVIDLGVMVP ADKILATARE KNVDIIGLSG LITPSLDEMC HVAAEMEREG
FNIPLLIGGA TTSRIHTAVK INPNYRRGQA IYVTDASRAV GVASSLISET SREKFVADIR
DEYAKMATAH AGAREKKDRQ TIEAARENKL KIKWDGYKPT RPSFLGTKVF EDYPLENLVP
YIDWTPFFQT WELAGQYPQI LKDDKVGEAA RGLFEDAQAM LKQMVEEKWV RASAVIGFWP
ANQIGDDDIE LYADDARKET LDVLHSLRQQ MKRTSERANM AIADFVAPKE TGIEDYVGGF
AVTAGFGEDE VAKRFEQAND DYKAILSKAL ADRLAEAFAE HMHERVRREF WGYAAEEKLS
NEDLIGEKYQ GIRPAPGYPA QPDHTEKRTL FKLLDAEAKI GMKLTESCAM WPGAAVSGLY
FSHPQSEYFG VGKIGKDQVV DYARRKGMEL QECERWLAPI LNYTPGAEPE EAAA
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