| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_2079 |
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| Symbol | |
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| ID | 5454879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 2264308 |
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| End bp | 2265039 |
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| Gene Length | 732 bp |
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| Protein Length | 243 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640877656 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001413350 |
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| Protein GI | 154252526 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0000777268 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0000000000000132313 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGAAC CCATGAAGAT TGGCGATACC AAGCCCGTGA GCGGCTCCTC TTCCCTCTCC
GCGCGTGAGC GTGAGAAAGC GCGGGCGGGA GCCGCCGTTT CGGGCGGGCG CACCGTTTCC
GACAGCGCCA CCATCATGGG CATTCCCGAA GCCGAGGTGA CGCCCGCCGT TCGCGATGCG
CTGATGCAGC TCATGGCGGA GGTCGATACG TTGCGCCGCG AGGTTTCGGC GATGCGCGAG
CGGCTGCGCG AGAGCGAGGA ACTGGCGGAT CGCGACCCGC TCATCCCGGT GCTCAACCGC
CGTGCCTTTG TGCGCGAGCT TTCCCGCGTC ATCGCCTATG GGCGGCGCTA TGCCGAGCCG
GCCGGGCTCG TCTATTTCGA CATCGACAAT TTCAAGCAGG TGAACGACGC CCATGGCCAT
GCGGCGGGCG ACGCGGCGCT TCATCATCTC GCGAAGCTCG TGCTCGACAA TGTGCGCGAA
AGCGATGTGC TTGGCCGGCT GGGCGGCGAC GAGCTCGGAC TCATTCTCGC CCGCGCCGAC
GAGGCCACTG CCAAGGCCAA GGCCGCTTCT CTCGCCTCCC TCGTCGCCAC GGCTCCGCTC
CACCATGGCG GGCGGGAGAT ACCGCTGTCG ATTTCCGTCG GCGCCGTCGC CTTCACCGGC
GAGGACGAGC CTGCGGATGC GCTCGCCCGC GCCGACAAGG CCATGTACGA AGCCAAGCGC
CGCGACGGCT GA
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| Protein sequence | MNEPMKIGDT KPVSGSSSLS AREREKARAG AAVSGGRTVS DSATIMGIPE AEVTPAVRDA
LMQLMAEVDT LRREVSAMRE RLRESEELAD RDPLIPVLNR RAFVRELSRV IAYGRRYAEP
AGLVYFDIDN FKQVNDAHGH AAGDAALHHL AKLVLDNVRE SDVLGRLGGD ELGLILARAD
EATAKAKAAS LASLVATAPL HHGGREIPLS ISVGAVAFTG EDEPADALAR ADKAMYEAKR
RDG
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