| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1877 |
|---|
| Symbol | |
|---|
| ID | 5455031 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | + |
|---|
| Start bp | 2037024 |
|---|
| End bp | 2038118 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640877454 |
|---|
| Product | alcohol dehydrogenase |
|---|
| Protein accession | YP_001413149 |
|---|
| Protein GI | 154252325 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.115652 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGG CCGTATTCCG TCAGGGCGAT CTTGTCGCCG CCACCATTCC CGATCCCGAA
CCCCAGGCAG GGCAGGTGCT CGTCAAGACG CTGGCCTGCG GGATTTGCGG CTCGGACCTG
CATGCCTTTC ATCACGCGGA CAAGATGGTC GAGACGGCGC AACGCTCCGG CTCCAGTTTC
TCGATGGACC TGACACGGGA CATCGTGTTC GGGCATGAGT TCTGCGCGGA GGTGCTGGAT
CACGGGCCGG GGACGGAAAA GAAGCTGAAG GCGGGCACGC GCGTCTGCTC CATGCCGCTT
GCCATCACCA TGAATGGCGA CAAGGCGAAT GTGCAGCCGG TCGGCTATTC GAACACGATG
CCGGGCGGCT TTGCCGAGCA GATGGTGCTG AACGAGCTGA TGCTGCTTGA AGTGCCGAAC
GGATTGCCGA CGGAGCAGGC GGCGCTGACC GAGCCGATGG CTGTGGGCTG GCACGCGGTG
CAGAAGGCAA ACATGACGAC GGAAGACATT CCGCTCGTCA TCGGCTGCGG ACCTGTGGGG
CTTGCGGTCA TTGCAGGACT GAAGATCAAG GGCATTCATC CGATCATCGC GGCGGATTTC
AGCCCGGCGC GGCGGAAGCT TGCCGAGCAG ATGGGCGCCG ATATCGTGCT CGACCCGAAG
GTCGACGCGC CTTACGCGCG CTGGACCAAG GAAGCGACGC CGGAGGGCTA CGACCCGACC
AACATCATGA CGCTGCTCGG GATGGGGCCG AAGCTGCGGC CGGGCGTCAT TTTCGAATGT
GTCGGCGTGC CGGGCGTCAT CCAGCAGATT TTCGAGGGCG CGCCGCGCCA GGCGCGTGTC
GTCGTTGTCG GCGTCTGCAT GGAGCAGGAC AAGTTCGAGC CGTTCTTCGG CATCAACAAG
GAACTGAACG TGCAATTCGT GCTCGGCTAT ACGCCGGAGG AATTTGCACT GACGCTGACG
CATCTCGCGG AAGGGAAGAT CGACGGATCG CCGCTCGTCA CGGGCAAGGT GGGCGTCGAG
GGCGTGAAGG AAGCGTTCAG CGAGCTGGGC AATCCGGAGA AGCACGCGAA GATTCTGGTG
GAGCCCTGGA GGTAG
|
|---|
| Protein sequence | MRAAVFRQGD LVAATIPDPE PQAGQVLVKT LACGICGSDL HAFHHADKMV ETAQRSGSSF
SMDLTRDIVF GHEFCAEVLD HGPGTEKKLK AGTRVCSMPL AITMNGDKAN VQPVGYSNTM
PGGFAEQMVL NELMLLEVPN GLPTEQAALT EPMAVGWHAV QKANMTTEDI PLVIGCGPVG
LAVIAGLKIK GIHPIIAADF SPARRKLAEQ MGADIVLDPK VDAPYARWTK EATPEGYDPT
NIMTLLGMGP KLRPGVIFEC VGVPGVIQQI FEGAPRQARV VVVGVCMEQD KFEPFFGINK
ELNVQFVLGY TPEEFALTLT HLAEGKIDGS PLVTGKVGVE GVKEAFSELG NPEKHAKILV
EPWR
|
|---|
| |