Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_1788 |
Symbol | |
ID | 5455546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 1942319 |
End bp | 1943152 |
Gene Length | 834 bp |
Protein Length | 277 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640877368 |
Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
Protein accession | YP_001413063 |
Protein GI | 154252239 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.381669 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 0.090615 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGTTC TGGACGGTCC GCGCGAGGAA TGGCGGCGTA TCCTGCATCA GGGAACGCCG GTCTGGGTGA AGCCGGAGGA GGGCGGCAAG CTCCGCCTTG GAGACGGACG GACGGTGGAC GAAGCCGCCG CGACCTATCT TCCGCCTTGC GATCCGACCA AGATCATCTG CATTCACCTG AACTACGATT CGCGCCGCGT CGAGTTCAAG GCGCCGCCTC TCGTCACGCC AACCTACTTT CAGAAGCCGC TGACGACGCT CAATTCCCAT CGCGGCTTTC TGAACCGTCC GGCCGACTGC CGCTACCTGA ACTACGAAGG CGAGATCGCG GCGATCGTCG GCAAGCCGAT GCGCAATGTC GCGCCCGATG AAGTGTGGGA CTGCCTTGCG GGCTTCGCGC CGGCCAACGA TGTCGGCGCG CAGGATTTCC GCGACACGGA TGCAGGCTCC ATGTTGCGCG TCAAGGGGCA GGACGGTTTC TGTCCCATTG GTCCGGGCAT CGTGCGCGGT GTCGACATCC GCAAGGAAAG CGTCCGCACC TACATCAACG GCAAGATGGT GCAGGACGGG CCGGTCAGCG AGATGACCTT TCCGATCGAC TACATCTTCG CCGATCTCTC GCGTCACATT ACTTTCCTTC CGGGCGACAT TGTGCTGACC GGCACGCCCG CCAACTCGCG GCCCATGAAT ATCGGCGACG TCGTCGAAGT GGAGGTGACG GGCATTGGAC GCATCTCGAA CACCGTCCAG GAAGTGCCGG CACCCGCGCA TGATGTCGGT CACCAGCCGA CCGACACCGA CGCGGTGCGC CGCGTCGCGC TCGGCCAGTT CTGA
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Protein sequence | MSVLDGPREE WRRILHQGTP VWVKPEEGGK LRLGDGRTVD EAAATYLPPC DPTKIICIHL NYDSRRVEFK APPLVTPTYF QKPLTTLNSH RGFLNRPADC RYLNYEGEIA AIVGKPMRNV APDEVWDCLA GFAPANDVGA QDFRDTDAGS MLRVKGQDGF CPIGPGIVRG VDIRKESVRT YINGKMVQDG PVSEMTFPID YIFADLSRHI TFLPGDIVLT GTPANSRPMN IGDVVEVEVT GIGRISNTVQ EVPAPAHDVG HQPTDTDAVR RVALGQF
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