| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1571 |
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| Symbol | |
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| ID | 5455348 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1709140 |
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| End bp | 1710891 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640877144 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001412847 |
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| Protein GI | 154252023 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.260448 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 0.637098 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGACTCGA AGACGCAGGA TGCGCGCAGA GTCGGTGGGC CTGACGACCT AAACCCAACG
GGAGCGCAAA CAGACGATTT GTTGATGAAC GCGGTGAAAG CCGTGGGCGA TGCTGCTTAT
CGCTGGTCCA TCGACGATGA CCTCTTGTAC TGGGGACCGG GCTCCGAAAT TCTCCTCGGC
ATTTCCGAGA TCTCAAAAAT ATCCACACAT AGGGATTTCA CGTCGCGTCT CGTGACGGAC
GGGCCGAGCC GTTATGAAAG CATTTGTCGC TCGCGCGAAA GCGACGCAGG TTCTGGTGTT
CCCTACAATC TCGAATACAG AATTCGCGAC GATTTTGGCG GCATGCGCTG GGTCGAGGAT
CGTGGCCGCT GGTTTGGCGG CCCGGATGGG GCGCCCGCCT TCGCGGTGGG AGTGCTACGT
GCGATCGACG AGCGGCACAA GCGCGAAGAA GAACTCGTGC GTCTTTCCAC TTATGACGAG
CTGACGGGGC TATTGAACCG CGTTCGTCTC AAGGAAGCCC TCACAGACGC GATGATCGCG
GCGCAGCGCG GCCGTCAGAA TTCCGCTTTT CTGCTCGTTG CCGTGGATAA TCTTGCACTC
GTCAACGACG CCTTCGGCTT CGATGTGGCC GATGAGGTGA TTGTCTGTGT CGGCGAGCGC
CTGCGCGGCC TGGCGCGGCG CGGCGACTCG CTCGGCCGCT ATGCGGGTAA CAAGTTCGGA
CTCGTTCTGC CCAACTGCAA TGAAGAGCGG CTCAGTGCGG TCTGCGACCG TCTTCTGGCA
GAGGTGCGCG ACAAGGTCGT GATGACGGCG CGCGGTCCCG TCGCCGTTAC CGTGTCGGCG
GGCTCGATCG CGCTTCCCGG TCATGCATCC AGCGTCGATC AGGCATTGGC GCGCGCGGAA
GAGGCTCTCG TTTCCGCCAA GCAAAGGCTT CGCGACAGCC ATGTTGTCTA TGCGCCGTCA
CGCGAGCGCG AGAAGACAAG GCTTCGCAAC ATCAACGTCG CGGATGAACT TATCACCGCT
CTCAACGACA AGCGTATTCG TATCGCCTAC CAGCCCATCG TCGATGCAAC GACCTGTGAG
CCCATGATGT ACGAGTGTCT CGTGCGCATG GAGCAGCCGG ATGGGAACAT TGCGGCGGCG
GGCCATTTTG TGCCGGTGGC GGAAAAGCTC GGCCTGATCG GCTTGATCGA CTACCGCGTG
ATGGAGCTTG CGGTGGAGAC GCTTCGCGCG CGTCCCGACG TCAAGCTTTC GCTCAACGTG
TCCGGGCGCA CGACAGGCGA TCGTCTGTGG CGGGACACGC TCGCTTCGCA TCTGGACAGG
GACAAGCACC TCGCCGAACG GCTCGTCATC GAGATTACCG AGACGGTTGC CATTCACGAG
GTCTCGGAAC TGACCGATTT CGTAGCAACG TTTCGCGAGC TTGGATGTCA GATCGCCATC
GACGATTTCG GCGCCGGTTA CACCTCGTTC CGCAACCTGA AGACGCTCGA TGTCGACATG
GTGAAGATCG ACGGCTCATT CGTCATCGAT CTGGCGACCA ATCCCGATAA CCAGTTTTTT
GTTCGGACGC TCGTCGACCT TGCGCGCAAT TTCAATCTGC CGACCGTGGC GGAATGGGTG
AGCAACGAGG AAGAAGTGGT GATGCTGAGG AATCTCGGCG TCGAGTATCT GCAGGGTTTC
TATCTCGGCG AGCCGCGCAT GACCCTGCCG CGTCCATTGG CCGGCATCGA CACAAAGCGG
ACGGTGGCCT GA
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| Protein sequence | MDSKTQDARR VGGPDDLNPT GAQTDDLLMN AVKAVGDAAY RWSIDDDLLY WGPGSEILLG
ISEISKISTH RDFTSRLVTD GPSRYESICR SRESDAGSGV PYNLEYRIRD DFGGMRWVED
RGRWFGGPDG APAFAVGVLR AIDERHKREE ELVRLSTYDE LTGLLNRVRL KEALTDAMIA
AQRGRQNSAF LLVAVDNLAL VNDAFGFDVA DEVIVCVGER LRGLARRGDS LGRYAGNKFG
LVLPNCNEER LSAVCDRLLA EVRDKVVMTA RGPVAVTVSA GSIALPGHAS SVDQALARAE
EALVSAKQRL RDSHVVYAPS REREKTRLRN INVADELITA LNDKRIRIAY QPIVDATTCE
PMMYECLVRM EQPDGNIAAA GHFVPVAEKL GLIGLIDYRV MELAVETLRA RPDVKLSLNV
SGRTTGDRLW RDTLASHLDR DKHLAERLVI EITETVAIHE VSELTDFVAT FRELGCQIAI
DDFGAGYTSF RNLKTLDVDM VKIDGSFVID LATNPDNQFF VRTLVDLARN FNLPTVAEWV
SNEEEVVMLR NLGVEYLQGF YLGEPRMTLP RPLAGIDTKR TVA
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