| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_1435 |
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| Symbol | sdhA |
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| ID | 5454992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Parvibaculum lavamentivorans DS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009719 |
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| Strand | + |
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| Start bp | 1565088 |
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| End bp | 1566881 |
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| Gene Length | 1794 bp |
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| Protein Length | 597 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640877008 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_001412712 |
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| Protein GI | 154251888 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 76 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGGCCA GCTACCAGTT CATCGATCAC ACCTTCGACG TCGTCGTTGT CGGCGCCGGC
GGCGCGGGGC TTCGCGCCAC GCTTGGCTGC GTCGAAAAGG GGTTGCGCAC GGCGAACATC
ACCAAGGTGT TCCCGACCCG CAGCCACACA GTCGCGGCGC AGGGCGGCAT CTCCGCCTCG
CTCGGCAATA TGGGGCCGGA CGACTGGCGC TGGCACATGT ACGACACGGT CAAGGGCTCC
GACTGGCTCG GCGACCAGGA TGCGATCGAA TATCTCTGCC GCCAGGCGCC CGAAGCCGTT
TACGAGCTTG AGCATTTCGG CGTGCCCTTC TCCCGCACCG AGGAAGGCAA GATCTATCAG
CGTCCCTTCG GCGGCATGAC GACGAATTTC GGCGAAGGCA TCGCGCAGCG CACCTGCGCC
GCCGCCGACC GCACGGGCCA CGCCATCCTG CACACGCTTT ATGGCCAGTC CGTCCGCCAC
AAGGCCGAGT TCTACATCGA ATATTTCGCC ATCGACCTCA TCATGGATGC CGAGGGCGCC
TGCCGTGGCG TCGTCGCGCT CGACATGGCG ACGGGCGAAA TCCACCGTTT CCGCGCCTCG
CTTGTCGTGC TCGCGACGGG CGGCTATGGC CGCGCCTATT TCTCGGCCAC CTCGGCGCAT
ACCTGCACGG GCGACGGCAA TGCGATGGTG CTGCGCGCCG GCCTGCCGCT TCAGGACATG
GAGTTCGTGC AGTTCCATCC GACCGGCATT TACGGCGCCG GCTGCCTCAT CACCGAGGGC
GCGCGCGGCG AGGGCGGCTA TCTCACCAAT TCCGAAGGCG AACGCTTCAT GGAGCGTTAT
GCGCCTTCCG CGAAGGACCT TGCGTCGCGC GACGTTGTTT CGCGTTCGAT GACGGTCGAA
ATCCGCGAAG GCCGGGGCGT CGGCGCGGAG AAGGACCATA TCCATCTCCA TCTCGACCAT
CTCGATCCGG CGATCCTTCA CGAGCGCCTG CCCGGCATTT CGGAATCCGC GCGCATTTTC
GCGGGCGTCG ATGTCACGAA GGAGCCGATC CCGGTCCTGC CGACCGTCCA TTACAACATG
GGCGGCATCC CGACCAACTT CCACGGCGAA GTGCTGACGC TGAAGAACGG CAACCCGGAT
ACGGTCGTGC CCGGCCTCAT GGCCATCGGC GAAGCGGCCT GCGTCTCGGT CCATGGCGCA
AATCGCCTCG GCTCCAATTC GCTGATCGAC CTCGTGGTCT TCGGCCGCGC GGCCGGCCTT
CGCGCCGCCG AGCTGGTCGA GCCCGGCCAG CGCCAGCCGG AACTCGCCAA GGGCGCGGGC
GACAACGCCG TCGCGCGCCT CGACAAGTAC CGCAATGCCA AGGGCGACAC GCCGACGTCC
GAGCTTCGTC TGCGCATGCA GCGCGCCATG CAGGAAGACG TCGCCGTCTT CCGCACCGGC
GAAACGCTCG TCTCCGGTCA GAAGCGCGTC GCCGATGTTC ACGCGGCGAT CCCGGATATC
CGCGTCTCCG ACCGCTCGCT GATCTGGAAT TCCGATCTCA TCGAGACGCT GGAATTCGAC
AATCTCATCG TCCAGGCCGT CGCCACCGTC GAAGGCGCGG TCAACCGCCA GGAAAGCCGT
GGCGCCCATG CGCGCGAGGA TTTCCCGGAG CGCGACGACG CGAACTGGAT GAAGCACACG
CTCTGCTGGG TGGACGATCA AAGCGGCAAG GCCTCGCTCG ACTACCGCCC CGTCCATGCC
TACACGCTTT CCAACGACAT CGAATACATC AAGCCAAAGG CGCGCGTGTA TTAA
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| Protein sequence | MTASYQFIDH TFDVVVVGAG GAGLRATLGC VEKGLRTANI TKVFPTRSHT VAAQGGISAS
LGNMGPDDWR WHMYDTVKGS DWLGDQDAIE YLCRQAPEAV YELEHFGVPF SRTEEGKIYQ
RPFGGMTTNF GEGIAQRTCA AADRTGHAIL HTLYGQSVRH KAEFYIEYFA IDLIMDAEGA
CRGVVALDMA TGEIHRFRAS LVVLATGGYG RAYFSATSAH TCTGDGNAMV LRAGLPLQDM
EFVQFHPTGI YGAGCLITEG ARGEGGYLTN SEGERFMERY APSAKDLASR DVVSRSMTVE
IREGRGVGAE KDHIHLHLDH LDPAILHERL PGISESARIF AGVDVTKEPI PVLPTVHYNM
GGIPTNFHGE VLTLKNGNPD TVVPGLMAIG EAACVSVHGA NRLGSNSLID LVVFGRAAGL
RAAELVEPGQ RQPELAKGAG DNAVARLDKY RNAKGDTPTS ELRLRMQRAM QEDVAVFRTG
ETLVSGQKRV ADVHAAIPDI RVSDRSLIWN SDLIETLEFD NLIVQAVATV EGAVNRQESR
GAHAREDFPE RDDANWMKHT LCWVDDQSGK ASLDYRPVHA YTLSNDIEYI KPKARVY
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