| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0414 |
|---|
| Symbol | |
|---|
| ID | 5454843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 446153 |
|---|
| End bp | 447145 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640875979 |
|---|
| Product | radical SAM domain-containing protein |
|---|
| Protein accession | YP_001411694 |
|---|
| Protein GI | 154250870 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0535] Predicted Fe-S oxidoreductases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 0.910572 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAATGGGC AGAACCGTGG GGAATGCTAT TTTCCCGTCA TGGTCACGGT CCTTGATAAC
GCCCCTCGGG AAAAGTTCTC CGATCCCTTG CTCACCGCAA AAGGCGAAAC GCGTGCCAGC
GTGGGCTTTC GCGAATTGCG GACGCTCTGG ATCAACACGG GCACGCTCTG CAATATCGAA
TGCGCCAATT GCTACATTCA TTCGAGCCCG ACCGACGACC GGCTGACCTA TATCAGCGCG
GCTGAAGCGG CGAGCTTTTT CGACGAGGCG GCGGGCTTTT CGGATGCGCT GCCCGAAATC
GGTTTTACCG GCGGCGAACC CTTCATGAAC CCGGACATGC TGGCCATGAC GGGAGATGCG
CTCGCGCGCG GACATGCGGT TCTCATTCTC ACCAATGCGA TGCAACCGAT GCTGCGTCCG
AGGGTCAAGG CCGGGCTTCT GGCCCTTAAC GAGACGTATG GCCGTCAGCT CTCGCTCCGC
GTCAGCCTCG ACCATTATAC CGAGACCTTG CACGACGCGG AGCGCGGCGC GGGCAGCTTC
GCAAAAGCGA TGGAGGGATT GCGCTGGCTC GCGGAGAACG GCTTTGCGGT TTCCGTTGCG
GGGCGAACCG TCACCGGCGA ACCGGAAGAC GAACAGCGAG GGGGCTATGC AGCTGTCTTC
GAACGCGAGA ACATTCGTAT TGATGCAAAT AATGCGGCGA TGCTCGTTCT TTTCCCTGAG
ATGGACGAGA AGGCGGATGT GCCCGAAATC ACGACCGCCT GCTGGGGCAT TCTTCATGTC
GATCCGGCCA ACATGATGTG CGCGACGAGC CGCATGGTCG TGAAGCGCAA GGGTGCGGCG
GCACCGGCGG TCGTCGCCTG CACGCTATTG CCGGACGATC CGCAGTTCGA AATGGGAACC
ACCCTCGAAG AGAGCGTCCG CCCCGTACAG CTCAATCATC GCCATTGTGC GAAATTCTGC
GTACTTGGCG GCGCGAGCTG TTCAGCAAGC TAG
|
|---|
| Protein sequence | MNGQNRGECY FPVMVTVLDN APREKFSDPL LTAKGETRAS VGFRELRTLW INTGTLCNIE
CANCYIHSSP TDDRLTYISA AEAASFFDEA AGFSDALPEI GFTGGEPFMN PDMLAMTGDA
LARGHAVLIL TNAMQPMLRP RVKAGLLALN ETYGRQLSLR VSLDHYTETL HDAERGAGSF
AKAMEGLRWL AENGFAVSVA GRTVTGEPED EQRGGYAAVF ERENIRIDAN NAAMLVLFPE
MDEKADVPEI TTACWGILHV DPANMMCATS RMVVKRKGAA APAVVACTLL PDDPQFEMGT
TLEESVRPVQ LNHRHCAKFC VLGGASCSAS
|
|---|
| |