Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Plav_0371 |
Symbol | |
ID | 5455536 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Parvibaculum lavamentivorans DS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009719 |
Strand | + |
Start bp | 396162 |
End bp | 396899 |
Gene Length | 738 bp |
Protein Length | 245 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640875936 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_001411651 |
Protein GI | 154250827 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.5049 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 68 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGGATC TGGATTTCTC GGGCAAAACG GCGCTCGTCG TTGGCGGCTC CAGCGGCATC GGCAATGGCA TCGCCCACGC CTATCGGACG CGCGGCGCCG AAGTGCATGT ATGGGGTACG AGGCAATCCG CGAAGGATTA CGAAGGCAGC GAAGGGTCGG ACATGACCGG CCTCCATTAT GCCCATATGG ACGTGGCCGA TTTCGATGCC ATCGAAGCAT ATCGGCCGCC CTTCGCGAAG CTCGACATTC TTGTGCTTTG CCAGGGCACG GTCATCTACA AGCGCGGCGA ATTCAAGATG GATGGCTTTC AGAAGGTGAT GGACGTCAAC CTCAACAGCC TCATGGCCTG CGCGATAAAA TTCCACGACA TGCTCGCCGC CGCGAAAGGC GCGTTGATTA CCGTCAGCTC CACGGCCGGC TTCCATGCGA CGCGCGGCAA TCCCGCCTAC AACGCCTCGA AGACGGGCGC CGTCGGCCTC ACGCGCACGC TGGGCGAGGC ATGGGCGACG GATGGCATCC GCGTGAACGG CATCGCCCCC GGCCTCGTGG ATACCAAGCT CACCAAGGTG ACGACTGAAG ACCCGAAGCG CCGCGAAATG GCAATCCGCG GCATTCCCGC CGGCCGCCTC GGCACGCCGG AGGACATGGC GGGTGCGGCG CTCTTTCTTG CCTCGCCGCT TTCTTCCTAT ATTTACGGAC AGACGCTCAT CGTCGATGGC GGCCTCATCC TTTCCTGA
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Protein sequence | MKDLDFSGKT ALVVGGSSGI GNGIAHAYRT RGAEVHVWGT RQSAKDYEGS EGSDMTGLHY AHMDVADFDA IEAYRPPFAK LDILVLCQGT VIYKRGEFKM DGFQKVMDVN LNSLMACAIK FHDMLAAAKG ALITVSSTAG FHATRGNPAY NASKTGAVGL TRTLGEAWAT DGIRVNGIAP GLVDTKLTKV TTEDPKRREM AIRGIPAGRL GTPEDMAGAA LFLASPLSSY IYGQTLIVDG GLILS
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