| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Plav_0104 |
|---|
| Symbol | |
|---|
| ID | 5453367 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Parvibaculum lavamentivorans DS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009719 |
|---|
| Strand | - |
|---|
| Start bp | 113555 |
|---|
| End bp | 114556 |
|---|
| Gene Length | 1002 bp |
|---|
| Protein Length | 333 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640875664 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001411384 |
|---|
| Protein GI | 154250560 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 0.233279 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCATT CGCTTGCCGA CAATGAAGAC AGCCTCGAAA CGCGCCTGCC GCCGGAGCCG
GCGCCCCGCA CGGGCGCACG CTATGCCATC GAGGCCCGGA ACCTGCGCAA GGTCTACAAG
GCGAGCGGCA ACCAGCCGGC CAAGGAGGCG CTGAAGGGCA TCGACCTTGC GATACCGCGC
GGATCGATCT TCGCGCTGCT GGGGCCGAAC GGCGCGGGCA AATCGACCTT CATCAATATT
CTTGCCGGGC TCGTGACCAA GACCTCCGGC TCGGCCTCGA TCTGGGGGTT CGATACGGAT
GTCAATCCGC GACAGGCGCG CGCCTCCATC GGCGTGGTGC CGCAGGAGCT CAACATCGAC
CCGTTCTTCA CGCCCGCCGA AGTGATGGAG ATGCAGGCGG GACTCTATGG CGTGCCGAAG
CGCGAGCGGC GGACCATGGA AATCCTGAAA GCGATGGGGC TCGACGACAA GGCGGATGCC
TATGCGCGGA CGCTTTCGGG CGGCATGCGG CGGCGGCTGC TGGTGGCGAA GGCGATGGTG
CACAACCCGC CGGTGCTCAT CCTCGACGAG CCCACGGCGG GCGTCGATAT CGAGCTCAGG
CGGCAGCTCT GGGAGTATGT GAAGGGCTTG CATGCCCGCG GCACGACCAT CGTGCTCACG
ACGCATTATC TCGAAGAAGC CGAGGCGCTG TGCGACACCA TCGCGATCAT CGACAAGGGG
CAGGTGGTGG CTTGCGAACC GAAGGAGACG CTGCTTGGAC GGATCAGCGA CAAGCGGCTG
ATCGTGCGGC CTGCGACACC CGCGACGCAA CTGCCGGCGG CGCTGGCCGG CATGAAGGCG
GAAGTGCGTC CCGGTGGGAC GATTTCCGTT CAGTACAATC CGGCGGAAAC AAATGTCATG
ACCATTCTCG GTCGGTTGAG CGCCGAGGGC ATGGAGATCA TCGACATTTC GACTGAGGAA
TCGGATCTCG AGGATGTTTT CATGCAGCTG ACATCGCACT AG
|
|---|
| Protein sequence | MAHSLADNED SLETRLPPEP APRTGARYAI EARNLRKVYK ASGNQPAKEA LKGIDLAIPR
GSIFALLGPN GAGKSTFINI LAGLVTKTSG SASIWGFDTD VNPRQARASI GVVPQELNID
PFFTPAEVME MQAGLYGVPK RERRTMEILK AMGLDDKADA YARTLSGGMR RRLLVAKAMV
HNPPVLILDE PTAGVDIELR RQLWEYVKGL HARGTTIVLT THYLEEAEAL CDTIAIIDKG
QVVACEPKET LLGRISDKRL IVRPATPATQ LPAALAGMKA EVRPGGTISV QYNPAETNVM
TILGRLSAEG MEIIDISTEE SDLEDVFMQL TSH
|
|---|
| |