Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pisl_0838 |
Symbol | |
ID | 4618063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pyrobaculum islandicum DSM 4184 |
Kingdom | Archaea |
Replicon accession | NC_008701 |
Strand | - |
Start bp | 750993 |
End bp | 751691 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 639783934 |
Product | putative RNA-associated protein |
Protein accession | YP_930357 |
Protein GI | 119872350 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1500] Predicted exosome subunit |
TIGRFAM ID | [TIGR00291] rRNA metabolism protein, SBDS family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.616695 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 0.124761 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAAGA AGGTGGCGGT TGCAAAACTT GACAGAGGCG GCGAGCATTT TGAAATCCTA GTAGACCCAG ATGCCGCGCT AGAGCTAAAG TTGGGGAAGT CCCTGGGGAT AGATAAAATA CTTGTCCACG AGGAGATATA CAAAGACGCA AAAAAAGGTC TTCGCGCGTC GGAGCAGTCT TTGAAAAAAG TTTTTGGCAC TACCGATATA AGAAAAATCG CTGAGATTAT CATAAAGGAA GGTGAAATAC CTCTTACGGC GGAGCAGAGG AGGAAACTTA TTGAAGATAA GAAGAGACAG ATTATCGAGT GGATTTCACG CAATTGTATT GATGTTAGGA CGAGGACTCC TGTGCCTCCT CAGAGAGTTG AAAACGCTAT AGAACAAGCC AGAGTGTCTA TAGATCCTTT CAAACCAGCT GAGGAGCAAG TACAGGAGAT TTTAAAAGAG ATCCAGAGGA TTATCCCTAT TAAGATAGCT ACTGCACGTA TTTCTCTTTC CGTTTCGTCT ACTTATGCCC AAAGAGTAAA GGGTTTGGTT GTAAAAATGG CGAAGATAGT AAACGAGAGA TATAGACCAG ATGGATCATG GGAAGCTGTA TTGGAGTTGC CGGCAGGTCT ACAAGATGCG TTAATTTCTA AAGTCAATGA TATTACTCAT GGTGATGCCG ATATTAGAAT ACTAGAAATT GTGTACTAA
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Protein sequence | MTKKVAVAKL DRGGEHFEIL VDPDAALELK LGKSLGIDKI LVHEEIYKDA KKGLRASEQS LKKVFGTTDI RKIAEIIIKE GEIPLTAEQR RKLIEDKKRQ IIEWISRNCI DVRTRTPVPP QRVENAIEQA RVSIDPFKPA EEQVQEILKE IQRIIPIKIA TARISLSVSS TYAQRVKGLV VKMAKIVNER YRPDGSWEAV LELPAGLQDA LISKVNDITH GDADIRILEI VY
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