| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0539 |
|---|
| Symbol | |
|---|
| ID | 4616891 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | + |
|---|
| Start bp | 502645 |
|---|
| End bp | 503733 |
|---|
| Gene Length | 1089 bp |
|---|
| Protein Length | 362 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639783629 |
|---|
| Product | THUMP domain-containing protein |
|---|
| Protein accession | YP_930060 |
|---|
| Protein GI | 119872053 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1818] Predicted RNA-binding protein, contains THUMP domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.0117648 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTGA TAATAAAGGT GAGAAGAGGG TTTGAGAAAG TTGTAGCCTC GATAATAAAG
GAGCTTCTGG GTTCTGCTGT CGAGGTAACT CCCGCGCCCC AAGGTTATCT CGGCATAGTT
TTTGTAAATG GAGTTGGTGC CGGTAAGTGG GAAATTGCAA AAATGTTAGT GGAAAAGGTG
CCAGAAGCTG ACAAAGTGCT TGTGGTGGAG GGCGTGACAA AAGCCGAACT TCCCGAAATA
GAGAGAGTTG CTGTGGAAGT TGCTAAGAGG TATATAAAGA GCGGCGACAC CTTTGCAATT
CGAACTACCA GAAGGGGGGT ACACAGCTTT ACTTCTATAG ACGTAAATGT GAGAGTTGGC
GCCGCCGTGA AAGAAGCAAC AGACGCCGAG GTCGATCTAG AAGAACCATC TAAGCCGTTA
TATATTGAGA TATTTCAAGA TATTGCCGCC ATTTGTATTC CGGCCACGAG AGAATATAGG
AAACTAAGAC GTGACAAACC ACTGCCGTTA GAGACGTTTA GAAAAGTTGC AATAGGCCAG
TTTATCTATG AAGGAGATGA GGAGGCTGTG CGAAAAATGG GAGAGAGAAT AGGCAGAGCA
GCACAAACCT TTGAAGTTGG TGAGCTTACA ATCTTGCTTT ACAAGCAGAC GTCTGGAAAA
ACGCTGAGGT TGTTTTTAGA AGCTGTAGAG GAGGGCATAG AGAGTAGATA CCAAATACAG
GTGAAAAGCT ATGGAAGAGC TGTGTGGAAA GTCCCCATAT ATGTTTACGA GTTATATCAA
TATGTAAGAG ATAGAGTGGG AGAGCCCTTG GTAGTTACAG ATCCTAAGGG GGACTATATA
ACACATGTCA AAGATAAATT AGCAGAGTTA TTCAAGGCAG AGAGAGTAAA CTTTTTAATA
GGGTCTAGAG AGGGGGTGCC GCCTGGCGTA TTTCGTTTCG CATCTCTAGT AGTAGATTTA
GTGCCCGAGG TCACCATTGC CACAGATTTT GTAATACCTT CGCTAGCTGT GGCTATCGCA
AGCGCGCTAG AGGAAGCAAA CGCCTTGCCT AAATATGTTG GGAAAAAGAG ACCGAGATCC
TCAGAGTGA
|
|---|
| Protein sequence | MDLIIKVRRG FEKVVASIIK ELLGSAVEVT PAPQGYLGIV FVNGVGAGKW EIAKMLVEKV
PEADKVLVVE GVTKAELPEI ERVAVEVAKR YIKSGDTFAI RTTRRGVHSF TSIDVNVRVG
AAVKEATDAE VDLEEPSKPL YIEIFQDIAA ICIPATREYR KLRRDKPLPL ETFRKVAIGQ
FIYEGDEEAV RKMGERIGRA AQTFEVGELT ILLYKQTSGK TLRLFLEAVE EGIESRYQIQ
VKSYGRAVWK VPIYVYELYQ YVRDRVGEPL VVTDPKGDYI THVKDKLAEL FKAERVNFLI
GSREGVPPGV FRFASLVVDL VPEVTIATDF VIPSLAVAIA SALEEANALP KYVGKKRPRS
SE
|
|---|
| |