Gene Pisl_0200 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPisl_0200 
Symbol 
ID4617710 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePyrobaculum islandicum DSM 4184 
KingdomArchaea 
Replicon accessionNC_008701 
Strand
Start bp190146 
End bp191462 
Gene Length1317 bp 
Protein Length438 aa 
Translation table11 
GC content56% 
IMG OID639783282 
Productnickel-dependent hydrogenase small subunit 
Protein accessionYP_929725 
Protein GI119871718 
COG category[C] Energy production and conversion 
COG ID[COG1740] Ni,Fe-hydrogenase I small subunit 
TIGRFAM ID[TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.0320348 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATAA CTAGACGCGA TCTAATTAGA GCTGGCTCTC TAGCGGCAGC TCTCTCAGCT 
TTAAACTGGC CGGCGCTTGT AAAAGCCGCA GGCGAAGCCG TAAAGGAAGG GTTGGTAAAC
ATCGTCTGGT TCGAAGCGCA GAGTTGCACG GGCGACACGG TCTCTATAAT CCAGGCCACA
GACCCCTCGC TGTTAGACGT TTTGCTGGGT ACAACGCCGC TAGTAGGGCC TGGCATGGTA
CGTCTAATAT TCCACGAAGC AGTTATGCCG CAGTGGGGCA CTTACCATAT AAAAGAGACT
ACAGACGTTG CGGATCATAA AATCCTTGAG AATTATGTAA CAAAGCAACC ACCTCCCGGT
GACGCCATGA AGCTCCTCGA GGAGATAGCA GAGGGCAAAT ACGGCCCCTA CGTGTTGGTT
CTAGAGGGTA GCTTCCCACA GGAGTACGGA ATACCTGGCA CAAACATCGA GCAGAAGGGC
GGCTACTACT GTCACGTAGG CCATAGGACC TGTACAGAGT GGGCAAAGCT TCTCTTTAAG
AATGCCATTG CCGTAGTTAC AGTTGGCAAC TGTTCATCCT ATGGCGGTCT CGTGGCGAAC
AAGGTGTTGG AGCCGCCGCC AGGCTTCAAA TACCCCAGCT GGTCCCCCTC GCCGACGGGC
GCCGTTGGCA TGTTCGACGA TCCGGTGAGG GGAACAAAGG GCATGATACA CATCAGTTAC
TTCCAGCCAG AGGTAGAGCC GTTTAGGAAG TACATAGACG AGGGCGGCGT GCCCGACTTC
AAGACAATGA AGCCGGCCGT CGCCGTGCCC GGTTGCCCAG CGAATGGCAA CGGCATACTG
CGGACGCTTG CGCTTCTGAC TTTAGTCGCC GCCGGATTGC TTAAGCCGGA CGTCCTGGAG
AGGAAGGCCT TCCTAGACCA GTACGCCAGG CCGCGCTTTA TATTTGAAAA CACAGTTCAT
GAACAATGCC CACGCGCCGG TTCCTACGCC GCTGGCGACC TAAGGCCGTA CCCCGGCGCC
GGCGACTACA GATGTCTATT TGCCGTGGGT TGCAAGGGGC CGATAGCTAA CTGCCCGTGG
AATAAAGTGG GTTGGGTCAA CGGTGTCGGC GGGCCGACTA GGACAGGCGG TGTCTGTATT
GGTTGCACCA TGCCGGGCTT TACCGACGCC TTTGAGCCAT TCTACGCGCC GTTGAATGCG
CCTAGGCTAC CCACTTTAGA GACGCTGGGG GTTGCGCTGG GAGGCGCCGC CTTGCTTGGC
GTCGCAGGCG CATACCTAGC CTCAAAGGCG GCTAAGCCTA AGGAGGAGAA GAAATGA
 
Protein sequence
MKITRRDLIR AGSLAAALSA LNWPALVKAA GEAVKEGLVN IVWFEAQSCT GDTVSIIQAT 
DPSLLDVLLG TTPLVGPGMV RLIFHEAVMP QWGTYHIKET TDVADHKILE NYVTKQPPPG
DAMKLLEEIA EGKYGPYVLV LEGSFPQEYG IPGTNIEQKG GYYCHVGHRT CTEWAKLLFK
NAIAVVTVGN CSSYGGLVAN KVLEPPPGFK YPSWSPSPTG AVGMFDDPVR GTKGMIHISY
FQPEVEPFRK YIDEGGVPDF KTMKPAVAVP GCPANGNGIL RTLALLTLVA AGLLKPDVLE
RKAFLDQYAR PRFIFENTVH EQCPRAGSYA AGDLRPYPGA GDYRCLFAVG CKGPIANCPW
NKVGWVNGVG GPTRTGGVCI GCTMPGFTDA FEPFYAPLNA PRLPTLETLG VALGGAALLG
VAGAYLASKA AKPKEEKK