| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pisl_0200 |
|---|
| Symbol | |
|---|
| ID | 4617710 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pyrobaculum islandicum DSM 4184 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_008701 |
|---|
| Strand | - |
|---|
| Start bp | 190146 |
|---|
| End bp | 191462 |
|---|
| Gene Length | 1317 bp |
|---|
| Protein Length | 438 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639783282 |
|---|
| Product | nickel-dependent hydrogenase small subunit |
|---|
| Protein accession | YP_929725 |
|---|
| Protein GI | 119871718 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1740] Ni,Fe-hydrogenase I small subunit |
|---|
| TIGRFAM ID | [TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.0320348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAA CTAGACGCGA TCTAATTAGA GCTGGCTCTC TAGCGGCAGC TCTCTCAGCT
TTAAACTGGC CGGCGCTTGT AAAAGCCGCA GGCGAAGCCG TAAAGGAAGG GTTGGTAAAC
ATCGTCTGGT TCGAAGCGCA GAGTTGCACG GGCGACACGG TCTCTATAAT CCAGGCCACA
GACCCCTCGC TGTTAGACGT TTTGCTGGGT ACAACGCCGC TAGTAGGGCC TGGCATGGTA
CGTCTAATAT TCCACGAAGC AGTTATGCCG CAGTGGGGCA CTTACCATAT AAAAGAGACT
ACAGACGTTG CGGATCATAA AATCCTTGAG AATTATGTAA CAAAGCAACC ACCTCCCGGT
GACGCCATGA AGCTCCTCGA GGAGATAGCA GAGGGCAAAT ACGGCCCCTA CGTGTTGGTT
CTAGAGGGTA GCTTCCCACA GGAGTACGGA ATACCTGGCA CAAACATCGA GCAGAAGGGC
GGCTACTACT GTCACGTAGG CCATAGGACC TGTACAGAGT GGGCAAAGCT TCTCTTTAAG
AATGCCATTG CCGTAGTTAC AGTTGGCAAC TGTTCATCCT ATGGCGGTCT CGTGGCGAAC
AAGGTGTTGG AGCCGCCGCC AGGCTTCAAA TACCCCAGCT GGTCCCCCTC GCCGACGGGC
GCCGTTGGCA TGTTCGACGA TCCGGTGAGG GGAACAAAGG GCATGATACA CATCAGTTAC
TTCCAGCCAG AGGTAGAGCC GTTTAGGAAG TACATAGACG AGGGCGGCGT GCCCGACTTC
AAGACAATGA AGCCGGCCGT CGCCGTGCCC GGTTGCCCAG CGAATGGCAA CGGCATACTG
CGGACGCTTG CGCTTCTGAC TTTAGTCGCC GCCGGATTGC TTAAGCCGGA CGTCCTGGAG
AGGAAGGCCT TCCTAGACCA GTACGCCAGG CCGCGCTTTA TATTTGAAAA CACAGTTCAT
GAACAATGCC CACGCGCCGG TTCCTACGCC GCTGGCGACC TAAGGCCGTA CCCCGGCGCC
GGCGACTACA GATGTCTATT TGCCGTGGGT TGCAAGGGGC CGATAGCTAA CTGCCCGTGG
AATAAAGTGG GTTGGGTCAA CGGTGTCGGC GGGCCGACTA GGACAGGCGG TGTCTGTATT
GGTTGCACCA TGCCGGGCTT TACCGACGCC TTTGAGCCAT TCTACGCGCC GTTGAATGCG
CCTAGGCTAC CCACTTTAGA GACGCTGGGG GTTGCGCTGG GAGGCGCCGC CTTGCTTGGC
GTCGCAGGCG CATACCTAGC CTCAAAGGCG GCTAAGCCTA AGGAGGAGAA GAAATGA
|
|---|
| Protein sequence | MKITRRDLIR AGSLAAALSA LNWPALVKAA GEAVKEGLVN IVWFEAQSCT GDTVSIIQAT
DPSLLDVLLG TTPLVGPGMV RLIFHEAVMP QWGTYHIKET TDVADHKILE NYVTKQPPPG
DAMKLLEEIA EGKYGPYVLV LEGSFPQEYG IPGTNIEQKG GYYCHVGHRT CTEWAKLLFK
NAIAVVTVGN CSSYGGLVAN KVLEPPPGFK YPSWSPSPTG AVGMFDDPVR GTKGMIHISY
FQPEVEPFRK YIDEGGVPDF KTMKPAVAVP GCPANGNGIL RTLALLTLVA AGLLKPDVLE
RKAFLDQYAR PRFIFENTVH EQCPRAGSYA AGDLRPYPGA GDYRCLFAVG CKGPIANCPW
NKVGWVNGVG GPTRTGGVCI GCTMPGFTDA FEPFYAPLNA PRLPTLETLG VALGGAALLG
VAGAYLASKA AKPKEEKK
|
|---|
| |