| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3425 |
|---|
| Symbol | |
|---|
| ID | 4625616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychromonas ingrahamii 37 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008709 |
|---|
| Strand | - |
|---|
| Start bp | 4232406 |
|---|
| End bp | 4234466 |
|---|
| Gene Length | 2061 bp |
|---|
| Protein Length | 686 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639798542 |
|---|
| Product | ABC transporter substrate binding inner membrane protein |
|---|
| Protein accession | YP_944708 |
|---|
| Protein GI | 119947028 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0257015 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATATT TTACCGGACA TAAATGGACT CAGTTTGTCG CTTTATTGGC GGTGTTCTTT
GCCCTTGTAA TCGTCATCGA CCCCGCCACT GGTGGTAACT TATGGCGCCT ACAAGAGACC
AGTTTCTGGC TGTTGCCTGA CATTGTTAAC GACGGTCTTA AGTTCCTTAT TGATGACTTT
TGGGTCGTAG AGATTTACGA TCCTGAGTTA GACATCACCG AAGAATCGAC CATGATACAA
GAGTTTACGC GCGGCCTGTC TGGCGTGATT CTCTTTAGCA TTAATTTGAT TCGAGAACTG
CTATTAGGTG GCGTTAAAAC CGTGGTGGCT TTTACCAGCT GGGAATTTAT CAGCGCAAAC
GAATGGGCTC GCATCCCAGC ACTGCCATGG CCAGCGGTGG CTGCGGGTGC CTTTTTAATT
GGCCACTATC TTGGGGGCCG TAGCCTGTCT ATTTTAGCCG GCACCAGCAC CCTTTACATT
GCTGTATTTG GTCAGTGGAC ACCCGCCATG CAAACCCTTT CCTTTGTGTT AGTAGCGGTG
CCCGTGTCGG TTTTCCTGGG ATTAACCTCA GGTATACTGG CCTTTAAGAA CAAAAGCTTC
GAGTCCATCC TGACGCCACT GTTAAACGTG GCTCAATCCA TGCCTCACTT CTCTTACTTA
ATCCCAGTGG TAGTATTCTT TGGCATTGGT GACCATGCGG GTGCTATTTC AACAATTATT
TTCGCCACTC CCCCAATGAT CCGCTTAACT ATTTTAGGCC TTAAAAAAGT CTCTCCGGAG
GTGTTGGAGG CTGGCATGAT GAGTGGCTGC AACGCACGCC AACTGATGTT CAGGGTGCTC
ATTCCAACAG CACGCCATGA CATTCTGATC GGCGTTAACC AGGTTATTAT GCAGTGTTTG
GCCATGGCCG TCATCGCCTC TTTTATTGGT GCAAAGGGGT TGGGCTACGA CTTACTGGTG
TCATTGAACA TGCTCAATAT AGGCCAGGCC CTCGAACTGG GTGTGTCTAT TGTATTGATT
GCTGTGGTTT TGGATAAGTT ATCCCTGGCC TGGGCTAACA AGCAGAGCGA TTACTTTGCT
GAATTACCCT TCCATTTGCG TCACAAGCAT TCGCTCGCCT TCTTGGGAAT TTTGATCGTC
ACCTCTGCTA TTGCCTACGC TGTGACGGTG GTTTTCCCAG ACAAGGCTAA CTACCTCTAC
TTCATCAATG ATTCACAAGG GTTGACTACC GAAAAGTTCT GGGACTTTAT CGTTGACTGG
ATCATCACCA ACACTTACGA CGCCGTGCAA AGCTTCAACT TCTTCATGAT CACCTCAATT
TTGATGCCCA TGAAAGAGGC TTATCTATCG ATGCCAGTCG CTGCAACCCT CTTTCTAGTT
GCAGGCACCG GTTACATTGT TGGAGGCATT CGCTCAGCTA TTATTGTGAC AGCCTTGATT
GCCTTTATTG CGTTAACACC CTGGTGGGAC CAAGCCCTCA TTACAGCCTA TATGACCACC
TTCGCGGTCA TCATTTCTGT TACTATTGGT TGCAGTGTTG GCATTTTGTG CTCTCGAACC
CCCCGAGCAA CTAAAGTTAT ATTGCTGGTT TGTGACACCT TCCAGACATT CCCGTCGTTC
GTCTACTTAA TTCCCGTCAT CATGTTGTTT GGCGTGAGTG ATTTATCAGT GCTTATTGCG
GTGATCGTAT ACGCTACTAT CCCTGCCACA CGTTACACCG TAGAAGGGTT GAGTAACGTG
CCTAAATCCT TGCAAGAAGC AGGCTCCATG TCAGGGGTTA ACCGCATGCA GCGTTTATTA
AAAATTGAAC TACCTTTGGC GTTCCCACAC ATCATGTTGG GCATTAACCA AACCGTTATC
TTCGCTTTGT TTATGGTTAT TATCGGCGCC TTTATCGGTA CTGACGACTT AGGTCAGCTG
ATCATGCAAT CCTTGTCTCA AGCCAACGCT ATGGGCCAAG GCATTGTGCT CGGCTTATGC
GTCGCCTTTA TCGGCTTGGC AGTAGACCAT TTGATCCATA CTTGGGCAGA GCAGCGTAAG
AAAGTGTTAG GGATTGCGTA G
|
|---|
| Protein sequence | MQYFTGHKWT QFVALLAVFF ALVIVIDPAT GGNLWRLQET SFWLLPDIVN DGLKFLIDDF
WVVEIYDPEL DITEESTMIQ EFTRGLSGVI LFSINLIREL LLGGVKTVVA FTSWEFISAN
EWARIPALPW PAVAAGAFLI GHYLGGRSLS ILAGTSTLYI AVFGQWTPAM QTLSFVLVAV
PVSVFLGLTS GILAFKNKSF ESILTPLLNV AQSMPHFSYL IPVVVFFGIG DHAGAISTII
FATPPMIRLT ILGLKKVSPE VLEAGMMSGC NARQLMFRVL IPTARHDILI GVNQVIMQCL
AMAVIASFIG AKGLGYDLLV SLNMLNIGQA LELGVSIVLI AVVLDKLSLA WANKQSDYFA
ELPFHLRHKH SLAFLGILIV TSAIAYAVTV VFPDKANYLY FINDSQGLTT EKFWDFIVDW
IITNTYDAVQ SFNFFMITSI LMPMKEAYLS MPVAATLFLV AGTGYIVGGI RSAIIVTALI
AFIALTPWWD QALITAYMTT FAVIISVTIG CSVGILCSRT PRATKVILLV CDTFQTFPSF
VYLIPVIMLF GVSDLSVLIA VIVYATIPAT RYTVEGLSNV PKSLQEAGSM SGVNRMQRLL
KIELPLAFPH IMLGINQTVI FALFMVIIGA FIGTDDLGQL IMQSLSQANA MGQGIVLGLC
VAFIGLAVDH LIHTWAEQRK KVLGIA
|
|---|
| |