Gene Ping_3370 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPing_3370 
Symbol 
ID4625681 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychromonas ingrahamii 37 
KingdomBacteria 
Replicon accessionNC_008709 
Strand
Start bp4162792 
End bp4164063 
Gene Length1272 bp 
Protein Length423 aa 
Translation table11 
GC content40% 
IMG OID639798482 
Producthemolysin 
Protein accessionYP_944655 
Protein GI119946975 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4536] Putative Mg2+ and Co2+ transporter CorB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGACGTCA TACCCACTAG TGGATTACTG ATCACCCTTG GAATTTTAAT TATTATTTCA 
GCTTATTTTT CTAGCTCAGA AACCAGCATG ATGTCATTAA ATCGCTATCG CTTACGGCAC
CTTGCAAAGG GTAAAAACAA AGTAGCAATA CGCGTTGAAA ATTTACTTAA AGAACCGGAC
AAACTTATTG GCCTGATCTT AATAGGTAAT AACTTAGTTA ATATTTTAGC GTCGGCGATT
GCAACCATCA TAGGTCAACG TTTATTTGGT GATGCCGGCA TTGCTATAGC GACCGGTATA
CTGACTTTAA TTATTTTGAT TTTTGCCGAA GTGACCCCAA AAACCTTAGC CGTGCTCTAC
CCCGAAAAAA TCGCCTTTCC AAGTTCATTT ATTTTGCGCC CGTTACAAAA ATTGCTCAGC
CCACTGGTAT GGTTAATCAA TGGTATATCC AATACCCTGT TACGAATTTT TGGTGTCAAT
GTTAACCATA CGGATGATCA AGCGCTATCA AGCGATGAAT TACGCTCAGT GGTGCATGAG
GCAGGCTCAA TGATTCCAGC GCATCACCAG CAGATGTTGC TGAGTATTCT GGAGCTTGAA
AAAGTCACCG TTGACGAAAT AATGATCCCA CGTAATGAGA TTGCCGCAAT CAATATTAAC
GATGATTGGG AGACTATTCT CAAACAATTA CAACATCGTA CTCATACAAT GACACTTTTA
TACCGGGATA CCATTGATGA TGCGATAGGT TTTGTGCATG CGCGCGATTC TCTCCTGATT
CTCCTTAAAG GGGATTTCAC AAAAACAAGC CTGTTACGTA GTGTGAGAGG ATTATATTTT
ATTCCCGAAG GCACTGCTTT AAATACCCAA CTGATTAAAT TTCAGCATAA TAAGGAGCGT
ATCGGTTTAG TGGTAGATGA ATATGGGGAT ATTCAGGGGT TAGTAACACT TGCCGACATT
TTAGAAGAAA TAGTTGGTGA CTTTACGACC ACACAGGAGC CCCACAGCTC GCAGGAAATT
TACAAGCAAA AAGATAATTC TTATATTATT GAAGGTAGTC TGGGTATTCG CGATATCAAT
AAAGAAATGG GTTGGAAGCT GCCAACAGAT GGACCTCGTA CTTTGAATGG TCTGATTTTA
GAATATCTTG AAGAAATACC TAAAGGACAT ATCAGTGCGC GTATCTGCGG TTATCCTATG
GAAATCTTAG AAGTGGAAAA CAATAAGGTT AAACTGGTCA GGGTGATGCC CCAGCTTTAC
AAAAAACAAT AG
 
Protein sequence
MDVIPTSGLL ITLGILIIIS AYFSSSETSM MSLNRYRLRH LAKGKNKVAI RVENLLKEPD 
KLIGLILIGN NLVNILASAI ATIIGQRLFG DAGIAIATGI LTLIILIFAE VTPKTLAVLY
PEKIAFPSSF ILRPLQKLLS PLVWLINGIS NTLLRIFGVN VNHTDDQALS SDELRSVVHE
AGSMIPAHHQ QMLLSILELE KVTVDEIMIP RNEIAAININ DDWETILKQL QHRTHTMTLL
YRDTIDDAIG FVHARDSLLI LLKGDFTKTS LLRSVRGLYF IPEGTALNTQ LIKFQHNKER
IGLVVDEYGD IQGLVTLADI LEEIVGDFTT TQEPHSSQEI YKQKDNSYII EGSLGIRDIN
KEMGWKLPTD GPRTLNGLIL EYLEEIPKGH ISARICGYPM EILEVENNKV KLVRVMPQLY
KKQ