| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_3317 |
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| Symbol | |
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| ID | 4625731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | - |
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| Start bp | 4093677 |
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| End bp | 4096346 |
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| Gene Length | 2670 bp |
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| Protein Length | 889 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 639798427 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_944603 |
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| Protein GI | 119946923 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTAATT CTATTGGAAA TGTATTATAT CTGGGGCAAA ATCTTCCCCT TGCTGAGGCA
TTTTTTAACT CATTTGCTGC AGATAAAAAA ACAGATAACT ATCAAGTTTT TCATTTAGTG
AGTGGAGAGA AACTCTTCCT GACCTTATCG GAAAATAGCG TTAGCCACCT TATTTCAGAA
ATCCCCATTA ATTTAGAAAT AAAAGATAAA ATCAAAGCAG ATTTTCCTCT ATTAAAGACA
ACCTACCTGA ATCCAGATGA CCAACCCAAA GAGACCGGAT TATCCGTTGA CCTTGAAAAT
ATTTTTACTG ATGAGGTTCA AGTCGTCTTA GAGTCTCTTA GTATTCCTAT CTATTTTAAA
AATAAACAAG CGCAATATTT AGCCTGTAAT CGCCATTTTT CGGAGCTGCT TGGCCTAACA
CCGAATCAAG TTATTGGAAA AAAATTAGCT GATCTATTGG ATTCCCCCTT AACGGATGCT
ATCGGCAAAA TAGATCAAAA AATGTTTATT GAGCATCAAG TTTGTTTACA TGAATACACT
TGGACTAATC CGGTGGGTGA ACAGTGTGAT CTTCTCTTTC ATAAAGAGTG CGCCGCTAGC
AGCGACATTC AAAGTGGACT TGTTTTTGAT ATCACCGAGC TTAATAAGTC ACAATCTTTA
TTAGAAAAAG AGCGTGTCAT GCTGCGTACG ACTGCTGATA CTTCTCGGGA CATTATCTTT
TTTAGAGACT TAGAGGGGCT ATTGTTAAGT TGTAATAAGC AGTATGAAAA ATTTACTGGT
GGTTTGGAAA AGGATCTTGT GGGCAAAACT GTGTTTGCCT TTCTTCCATT AGATGAAGCA
ATATTAGCGG CACAACGAGA CAAATATATT ATAAAAAATA ATAAGCCTTA TACATGGAAG
GGTTTTTTTA CAGCGCACAA TAATGAATGT TATTTTTTTG AAATAAAAAA ATCACCTATT
CAGGATAAAG ATGGAAATGT ACAAGGGGTC GCAACGGTTG GACGGAATCT GACCGAGCAG
CTAAGAATGC AGAAGCGTCT TCAAATTACC GATGTTGTAT TCGAACACAG TAGAGAAGCG
CTGATCGTGA CCGACGGCGA TGGTCACATC ATTTCAGCCA ATGATCATGC CTGTTTTCTT
TTTGGCTATA GTAAAGACCA GCTGTTAGCG GAAGAGATTA ATTTATTGGC TTCTGATAAC
TATAATGATG AGTATTATAA AAATATTGAG CAGATTTTAG AGACAGAGAG TTTCTGGCAG
GGAGATATTA CCTATCGCAC TAAGAATGGT AGTGTTTATT ATGCCTGGTT AGAGGTCTAT
GCGGTCGAAC ACGTAGAGGA AAACAGCGTT GACCGAGTCT ATTCTTATAC GGATTTAACG
CACTTTCAAG TAACAGATAA AAAAATTAGC TTTTTATCAA AACAGGATCC GTTAACTGGA
TTACGTAATC GAATTTCACT GTTTAGCCGG CTGGAAGATA TAATAACATG CGCCAATTAT
CTGCACAGCG CAGTGGCGGT GATGTTAATT GATATTGATG ATTTTAAGGC GATTAATGAT
AACTATGGTC ATAATGCCGG TGATAAGGTT TTAAAGGAGG TTGCTGAGCG TCTAACAAGC
TGTGTTTCCG GAAAAGATAC CTTGGGTCGT TATGGTAATG ACCAATTTAT TATTATTATC
GACGAATTAG TCAATGAATT CGATGCTGCT ATGGTTGCGA ATAAAATAGC CGAGCAGTTT
AGCCGCGCGT TTCTTATAGA AAACAGTTAT ACAAATCTTA GCGCAAGTAT TGGTATCAGT
CTTTCCCCTG ATGATGGGAT GGAGGCTAGT ACCCTGTTTC TAAATGCTGA AGATGCGATG
CAGCGTGGAA AAAGCGACAG AAGCGCAGCA TTCAATTTTT ATACCGCCAG CTTGACGGTT
GGTTTGAATA AAGAGTTTGC ATTAGAACAA GAGTTACAGC AGGCATTATT GTCAGAGCAG
TTTGTTATGT ATTATCAGCC GCAATATGAT TTTAATAACC GTCAAATTGT TGCGCTGGAA
GGTTTACTGC ATTGGCACCA CCCCAAGCGT GGAATATTAA CGCTGGAGCG CTTTTTGAGT
GTGGCTGAAG GGAGTCATTT ATTAGTTCCC ATAGGTTGGG AAATAATTCA TAAAGCTGCT
TTACAAGCGG TTATCTGGGA AAAATCGGAG ATTAAATTTG GCCGGATTGC GGTTAATCTA
TTCACTATAC AATTATCACA AATTAGTTTT ATTGCCGAGC TGCAAACAAT TTTAAAAGAA
ACCGGCTGTT CAACCGGGCA GCTTGAATTT TTAGTGGATA AGACTGTTCT GCAGCACGCC
TCAACAGATA TTCTGTCGAA TTTGGATAAT CTTAATAAAA TGGGCATTAC ATTAACCATA
ACAAATTTAG GCATAGACGC TAATGTTATT GATTTAATTC ATCGCCTGGG TGTTCAAAAC
TTAAAAATAT CAGACTCGCA GATTAACAGT GGATCAGGAA TTTTGGCGAG TGAGCTACAA
TTACAATGCT TTAAATTTTT TGCCCGCAGT TTAAGTCTTA ATGTCGTTAG TGATGGTCTC
GATAATGCCG AACAAGCAAG CTTTGTTCAG GAAAAAGTGA TGAGTACCCC TGAAGCCACC
TTTTACCTGC GTTGTAATAA ACGCAAATAA
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| Protein sequence | MSNSIGNVLY LGQNLPLAEA FFNSFAADKK TDNYQVFHLV SGEKLFLTLS ENSVSHLISE
IPINLEIKDK IKADFPLLKT TYLNPDDQPK ETGLSVDLEN IFTDEVQVVL ESLSIPIYFK
NKQAQYLACN RHFSELLGLT PNQVIGKKLA DLLDSPLTDA IGKIDQKMFI EHQVCLHEYT
WTNPVGEQCD LLFHKECAAS SDIQSGLVFD ITELNKSQSL LEKERVMLRT TADTSRDIIF
FRDLEGLLLS CNKQYEKFTG GLEKDLVGKT VFAFLPLDEA ILAAQRDKYI IKNNKPYTWK
GFFTAHNNEC YFFEIKKSPI QDKDGNVQGV ATVGRNLTEQ LRMQKRLQIT DVVFEHSREA
LIVTDGDGHI ISANDHACFL FGYSKDQLLA EEINLLASDN YNDEYYKNIE QILETESFWQ
GDITYRTKNG SVYYAWLEVY AVEHVEENSV DRVYSYTDLT HFQVTDKKIS FLSKQDPLTG
LRNRISLFSR LEDIITCANY LHSAVAVMLI DIDDFKAIND NYGHNAGDKV LKEVAERLTS
CVSGKDTLGR YGNDQFIIII DELVNEFDAA MVANKIAEQF SRAFLIENSY TNLSASIGIS
LSPDDGMEAS TLFLNAEDAM QRGKSDRSAA FNFYTASLTV GLNKEFALEQ ELQQALLSEQ
FVMYYQPQYD FNNRQIVALE GLLHWHHPKR GILTLERFLS VAEGSHLLVP IGWEIIHKAA
LQAVIWEKSE IKFGRIAVNL FTIQLSQISF IAELQTILKE TGCSTGQLEF LVDKTVLQHA
STDILSNLDN LNKMGITLTI TNLGIDANVI DLIHRLGVQN LKISDSQINS GSGILASELQ
LQCFKFFARS LSLNVVSDGL DNAEQASFVQ EKVMSTPEAT FYLRCNKRK
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