| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0494 |
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| Symbol | |
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| ID | 4626874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 627570 |
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| End bp | 628697 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 639795685 |
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| Product | type II secretion system protein (twitching motility protein) |
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| Protein accession | YP_941948 |
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| Protein GI | 119944268 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0124637 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.766223 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAATTTG AAGAGATGCT CAATATTTTG TCGAGCAAAG ATGGCTCGGA TCTTTACCTG
TCAACGGGGG CTCCCCCTTC AGCTAAATTT CAAGGTACAT TAGAACCTTT AACGGATATT
CCTTTTCGGG CAGGTGAAGT TGCTGAAATA GCCGCTTCGA TTATGGATAG TGAACAAAAA
GTGGCATTTG AGCAAGAGCT TGAAATGAAC TTAGCGATAT CTATTTCCAA GGTTGGACGC
TTTCGAGTTA ATATTTTTAA ACAGCGTAAT GAAGTTTCAA TCGTTGCGCG TAATATTAAA
ATTGAGATCC CCAGCCTCGA TGAATTAGGG CTTCCGGAAA TACTTAAAAG TGTGATCACG
GCTAAACGAG GTTTAGTGCT ATTTATCGGT GCAACGGGCT CAGGTAAATC GACTTCATTA
GCAGCCCTTA TTGATCACCG AAATACTAAT CTCTCCGGTC ATATTATTAC CATCGAAGAT
CCTATTGAGT TTGTACACCA GCATAAAAAA AGTATCGTCA ATCAGCGTGA AGTAGGAGTT
GATACGCGTA GTTTTCATGC GGCCTTAAAA AATACTCTGC GTCAGGCACC CGATGTTATT
TTGATTGGTG AAATCCGCGA TAGGGAAACA ATGGAGCACG CATTAGCCTT TGCAGAAACC
GGCCACTTAG CTATTTCAAC ATTACATGCG AATAATGCTA ACCAGGCATT GGATCGTATT
ATTAACTTCT TTCCAGAAGA TCGTCGTATT CAGTTGTTAA GTGATTTAGG TAATAACTTG
AAATCCTTTA TTTCTCAACG TTTAATTCCA ACGATTGATG GCAAACGTTG TGCTGCCATT
GAAGTCATGA TGGGAAGCCT AACGATACGC GATATGATTA AGCGCGGTGA TTTTGGTTTG
CTGAAAGAGG TGATGGAAAA ATCAGAAGGA TTAGGGATGA AAACCTTTGA TGGTGCATTA
TTTGATCTCA CCATTGCAGG AAAAATATCT GAAGAGGAAG CGATAAAAAA TTCAGATTCA
GCCACTAACC TAACGCTGAA ATTTAAGTTG TACCATGGTA ATACTACTGA AGAAGCAGGA
CAAGACGACA AAAAATCAGG TGGATTGACG TTATCAATGA TGGATTAA
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| Protein sequence | MEFEEMLNIL SSKDGSDLYL STGAPPSAKF QGTLEPLTDI PFRAGEVAEI AASIMDSEQK
VAFEQELEMN LAISISKVGR FRVNIFKQRN EVSIVARNIK IEIPSLDELG LPEILKSVIT
AKRGLVLFIG ATGSGKSTSL AALIDHRNTN LSGHIITIED PIEFVHQHKK SIVNQREVGV
DTRSFHAALK NTLRQAPDVI LIGEIRDRET MEHALAFAET GHLAISTLHA NNANQALDRI
INFFPEDRRI QLLSDLGNNL KSFISQRLIP TIDGKRCAAI EVMMGSLTIR DMIKRGDFGL
LKEVMEKSEG LGMKTFDGAL FDLTIAGKIS EEEAIKNSDS ATNLTLKFKL YHGNTTEEAG
QDDKKSGGLT LSMMD
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