| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ping_0472 |
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| Symbol | hlyD |
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| ID | 4626749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychromonas ingrahamii 37 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008709 |
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| Strand | + |
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| Start bp | 595092 |
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| End bp | 596171 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 639795665 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_941928 |
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| Protein GI | 119944248 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000402153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.138011 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAC AGATTCTGCG CGCAGCATTA ATCACTATCA TCACTATTGG TACAAGTTAT
CACTCACTGT TATCAGCACA GGAAAGAGAA ATGCCCGCTG TTTCTGTTTA TACGGAGAGC
GTGGCCTATC ATCAGGTAGC ACAGTCACTT TCTTTGATTG GCAAGTTGCA GTCAGATCAG
TCTGTGAATG TCGCCACTGA AGTCGACGGT AAAGTCAAAT CCATTAATGT CCAGGCTAAC
CAGCAGGTCA AAACTGGGCA GCTGTTATTC CAATTGGACG ATACCAAAGC ACAGGCAGCG
ATGCTGGAAG CGCAGGCTTA TTTTTTTGAT GAACAGCGTA AATTACGCGA ATTTACAAAG
TTAGTAAAAA GCAATGCCAT TACTCAGACG GCAGTAGAAG GGCAGATCGC AAGCGTCGAT
ATTGCCCGGG CACGTTTAAA GGCTGCTCAA GCAGAAGTGG ATCGCCACGC TTTAAGCGCA
CCTTTTGCCG GCACGATTGG GCTGATTGAT TTTAGTTTAG GTAAGATGGT GGGAACGGGC
AGTGAGCTGA TGACCCTTGA TAATCTTACT CAAATGACGC TGGATCTGCA GGTGCCGGAA
CGTTATTTAT CCATGCTCAG CAAAGGGATG CCCGTGAGTG CAACTAGCCG CTCGTGGCCA
GAGACGATAT TTAACGGGCA GTTGACGGCA ACAAATTCGC GTATTAACCC GGATACCCTT
AACCTGCGTG TACGGGTCTT ATTTAATAAT CCGGATAATA AATTAAAACC AGGCATGATG
ATGTCCGCCA AAATAGTTTT CCCCGCCATT AATGCCCCTG TTATCCCGGT GCAGGCGTTA
GAGTACTCGG GCACTAAACG TTATGTTTAT ATCGTTAATA AGCAGGGCAT GGCAAGTCGT
CAGGAAGTTA TTTTAGGGGC ACGTATTAAA AACCAGATAC TGATTGAAAA GGGTGTCAAG
ATTGGAGACA AAATTGTGGT GCAGGGGTTG GTTAATATGC GTGACGGGTT AAAGGTAGAA
GATCTTTCCA GCATAGAAAA ACCCGATGAA AGCAGCAAAA AAATGCAGGA GAGCAAATAA
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| Protein sequence | MNKQILRAAL ITIITIGTSY HSLLSAQERE MPAVSVYTES VAYHQVAQSL SLIGKLQSDQ
SVNVATEVDG KVKSINVQAN QQVKTGQLLF QLDDTKAQAA MLEAQAYFFD EQRKLREFTK
LVKSNAITQT AVEGQIASVD IARARLKAAQ AEVDRHALSA PFAGTIGLID FSLGKMVGTG
SELMTLDNLT QMTLDLQVPE RYLSMLSKGM PVSATSRSWP ETIFNGQLTA TNSRINPDTL
NLRVRVLFNN PDNKLKPGMM MSAKIVFPAI NAPVIPVQAL EYSGTKRYVY IVNKQGMASR
QEVILGARIK NQILIEKGVK IGDKIVVQGL VNMRDGLKVE DLSSIEKPDE SSKKMQESK
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