| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3947 |
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| Symbol | |
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| ID | 8255081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 4746749 |
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| End bp | 4747771 |
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| Gene Length | 1023 bp |
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| Protein Length | 340 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644937611 |
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| Product | polysaccharide biosynthesis protein CapD |
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| Protein accession | YP_003094200 |
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| Protein GI | 255533828 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.689942 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.177131 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTTGGATT TAAAGAATAA AAGTATTTTA ATAACTGGAG GGACAGGTTC TCTGGGAAAA
GCATTAACAA AAGAGATTTT GTCAAAATAT CCTGAGGTAA GAAGACTTAT CATTTTTTCT
AGGGATGAGC AAAAGCAATT TCAGATGGCT CAGGAATATC CAGAAAAACA ATATCCACAG
ATAAGATTCT TTATTGGAGA CGTAAGAGAT TCACAAAGAT TGACCAGAGC TTTTAAAGGT
GTAGATTACG TTATACATGC GGCTGCAATG AAACATGTCC CGATAGCTGA ATATAATCCT
GACGAGTGTA TTAAGACAAA TATAAATGGC GCACAAAACG TTATTCATGC TTGTTTTGAG
ACTAATGTGC AAAAGGTAGT TGCTTTGTCT ACTGACAAGG CTTGTGCGCC AATCAATTTA
TATGGTGCAA CAAAATTAAC ATCAGATAAA CTTTTTGTCG CGGCAAATAA TATAAAAGGG
AATAGTCCGA TTATCTTCTC GGTAGTGCGA TATGGTAATG TAATGGGATC AAATGGATCT
GTAATTCCAT TTTTTTTAAA TAAAAGAACA GAAGGAAAAT TGCCTATTAC CGATGCTGAA
ATGACACGCT TTAATATTTC ACTGCAGGGC GGAGTAGATA TGGTTATGCA TGCACTGGGT
AACGCTTGGG GTGGAGAGAT ATTTATCCCA AAGATACCAT CTTATAAAAT AACTGATGTT
GCTACTGCTA TTGGTCCAAA TTGTGAACAG GTTCTGGTAG GAATCAGACC AGGGGAAAAG
GTTCATGAAG AGATGATTAC ACCTTCTGAT TCTTTTTACA CCTATGATTT GGGGAAATAT
TATACGATTT TACCGGCAAC TCACCATTGG AGCATTGAAG ATTTCAAAAG TACTTTTAAT
GCTCAGCTGG TAAAGCCAGG TTTCGCTTAC AATTCTGGTG AAAACACGGA ATGGGAAACG
GTAGATACAT TGCGATCTTT AATTAAAGAA CATGTTGACG TAAGTTTTAA CTACAATGAA
TAA
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| Protein sequence | MLDLKNKSIL ITGGTGSLGK ALTKEILSKY PEVRRLIIFS RDEQKQFQMA QEYPEKQYPQ
IRFFIGDVRD SQRLTRAFKG VDYVIHAAAM KHVPIAEYNP DECIKTNING AQNVIHACFE
TNVQKVVALS TDKACAPINL YGATKLTSDK LFVAANNIKG NSPIIFSVVR YGNVMGSNGS
VIPFFLNKRT EGKLPITDAE MTRFNISLQG GVDMVMHALG NAWGGEIFIP KIPSYKITDV
ATAIGPNCEQ VLVGIRPGEK VHEEMITPSD SFYTYDLGKY YTILPATHHW SIEDFKSTFN
AQLVKPGFAY NSGENTEWET VDTLRSLIKE HVDVSFNYNE
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