| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3911 |
|---|
| Symbol | |
|---|
| ID | 8255045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 4704601 |
|---|
| End bp | 4705221 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644937575 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_003094164 |
|---|
| Protein GI | 255533792 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2202] FOG: PAS/PAC domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.504208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGAT TAAAAATAGA GGAAGAAAAG TACAACAATC TGTTGACCCG ATTCAATACA
CTTTCAAAAG CTACCAGCGA TGCCATCTGG GACCTGGACA TCAAAAGCGG ATATATGGTA
TGGAACAAAG GTATTGTGGG GATTTTTGGT CACCGGGACA TTGCCCCTAC CCGCGAATGG
TGGTTAAGCC ATATCCATCC GGAGGATTTG GACCTGGTGC TTAATGAATT CGAACAGCTG
TTCAAAAACC ATAAAAACCG GACAAAGACC GAATACCGTT TCAGGTGTGC CGATGGCACC
TATAAATCAG TTTTAGACCG CTCTTTTACC CTTTTCGATG AAGAGGAAAA GCCGGTAAGG
ATCATTGGTT CTATACAGGA CATTACAGAG CGGGTCAATT ATGTGAATGC CATGCAGGAA
CAAAATGTCC GGTTAAGGGA GATTTCCTGG ATCCAGTCGC ACGAAGTACG GGCACCCTTA
GCGCGGATCA TGGGCCTGGT GAAGCTGCTG GATGCCACTG CTGAAACCCA TCCTGATGTG
AAAGAGCTGG TAGGCCACCT TAGCGGATCT GCAGCAGAGC TGGACAATGT GATCAGTAAT
ATCCTTAAAC GGACTTCTTA A
|
|---|
| Protein sequence | MARLKIEEEK YNNLLTRFNT LSKATSDAIW DLDIKSGYMV WNKGIVGIFG HRDIAPTREW
WLSHIHPEDL DLVLNEFEQL FKNHKNRTKT EYRFRCADGT YKSVLDRSFT LFDEEEKPVR
IIGSIQDITE RVNYVNAMQE QNVRLREISW IQSHEVRAPL ARIMGLVKLL DATAETHPDV
KELVGHLSGS AAELDNVISN ILKRTS
|
|---|
| |