| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3449 |
|---|
| Symbol | |
|---|
| ID | 8254569 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4101102 |
|---|
| End bp | 4102070 |
|---|
| Gene Length | 969 bp |
|---|
| Protein Length | 322 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644937101 |
|---|
| Product | Porphobilinogen synthase |
|---|
| Protein accession | YP_003093704 |
|---|
| Protein GI | 255533332 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0113] Delta-aminolevulinic acid dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.953419 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACAAC GTCCACGTAG ATTAAGAAAA AATCCGGTTG TGAGAGAAAT GGTAGCTGAA
ACCCGGTTAA CCAAAGACCA GTTCATCTAT CCATACTTTA TTGTACCTGG TAAAGATGTG
GTCCGTCCGC TGGATGCGAT GCCCGGCATC AGTCATTTTT CTGAAGATAC ATTGGTAAGA
GATGTGGAGA AAGGACTAAA GCTGGGTGTA AACAAAATTA TGCTGTTTGG TGTGGGTGAT
GAGAAAAGTG AAAATGCGGC GGCAGCTTAT CACGACCATT CTTTGGTACC TTCTGCTGTC
CGTATGTTAA AAAAGAACTT TGGTGATGAC CTTTACGTGG TAACGGATGT TTGTGTTTGT
TCTTATACTA CCCACGGACA TTGCGGCATT TTAAGGGATG AGTATGTGCA GAATGACGAA
ACAGTGGAGG TTATAGCCAG AATGGGGCTA ACCCATGCCC AGGCTGGTGC CGATATGCTG
GCTCCATCGG ATATGATGGA TGGGCGGGTA GCTGCAATGA GAACTGTACT GGATGGAGCG
GGTTACGTAA ATACTGCCAT TATGTCTCAC GCTACCAAAT TTGCCTCAGC TTATTACGGA
CCTTTCAGAG AGGCAGCCGA TTGTGCTCCG GGCAAGGGCG ACAGGAAAGC TTACCAGATG
GATTTCAGGA ATGGTCATGA AGCACTTAGG GAAGCTTTGC TGGATGAAAG CGAGGGTGCT
GATGTGTTGA TGGTGAAACC GGCACTGGCG TATATGGATG TGATCCAGAA CCTGAAACAA
CATACTGATC TGCCGATTGC CTGTTACAAT GTATCCGGAG AATATTCGAT GGTTAAAGCT
GCTGCGCAAA AAGGCTGGAT AGATGAGCAA AAAGTAGTGA TGGAAACTAT GTATGGCTTT
GCACGTGCAG GTGCAAGTAT CATCACCACC TATCACATTA GGGATATGGT TGAAAAGAAT
TGGATATAG
|
|---|
| Protein sequence | MLQRPRRLRK NPVVREMVAE TRLTKDQFIY PYFIVPGKDV VRPLDAMPGI SHFSEDTLVR
DVEKGLKLGV NKIMLFGVGD EKSENAAAAY HDHSLVPSAV RMLKKNFGDD LYVVTDVCVC
SYTTHGHCGI LRDEYVQNDE TVEVIARMGL THAQAGADML APSDMMDGRV AAMRTVLDGA
GYVNTAIMSH ATKFASAYYG PFREAADCAP GKGDRKAYQM DFRNGHEALR EALLDESEGA
DVLMVKPALA YMDVIQNLKQ HTDLPIACYN VSGEYSMVKA AAQKGWIDEQ KVVMETMYGF
ARAGASIITT YHIRDMVEKN WI
|
|---|
| |