| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3436 |
|---|
| Symbol | |
|---|
| ID | 8254556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 4088051 |
|---|
| End bp | 4088686 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644937088 |
|---|
| Product | PAS sensor protein |
|---|
| Protein accession | YP_003093691 |
|---|
| Protein GI | 255533319 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.21303 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAGGG ATATAAATAA TGCGCTTCAG GAAATAACAG ATTTAAAGAA CGAAGCGAAA
AGCTCAAAAA ATAAACTGCG TTCATTTTTT GAGAGTTCAA GCGTGATCCA TTTGCTGATA
GATACGGATC TAAGGGTGAT TGATTATAAC AGGGCAGCCG TAAATTTTAT AAAGAAGCAT
TGTAAAATCA ATATAAAGGT TGGGACAAAA GCATCCAGGT TAATACATAA AGATCAGGTA
GCCAGTTTTA TGGAAAACTA TGTCAAGGCA CTTGATGGCA TACCCGTCCG TATGGAACAG
GAGTTTAAAT ATGGGGGTGA AAGGATTTTA TGGTTCCTGA ATTATGAACC TGCATGGGAT
TGTGACGGAA ATATTTTAGG CATGTCGTAC AATGCCGTTG ACATTACCGA GAAAGTAGCC
AACGAAAATA AGATTGTTGC CCAGTATTAT TCATTGGAGA GTATCGCTTA TATCCATTCA
CATCATTTTC GGGCCCCTGT TACAAACATT ATGGGGCTGA TGAATATCTT TAAAATTAAT
GGCTACAAAA CTACAAAACA AGAGCTGTTA ATGATGCAAA GGGCTGTAAA TGAGTTGGAA
GTCCAGATGA CCAGGATTGA AAACCATCTG GTGTAA
|
|---|
| Protein sequence | MQRDINNALQ EITDLKNEAK SSKNKLRSFF ESSSVIHLLI DTDLRVIDYN RAAVNFIKKH
CKINIKVGTK ASRLIHKDQV ASFMENYVKA LDGIPVRMEQ EFKYGGERIL WFLNYEPAWD
CDGNILGMSY NAVDITEKVA NENKIVAQYY SLESIAYIHS HHFRAPVTNI MGLMNIFKIN
GYKTTKQELL MMQRAVNELE VQMTRIENHL V
|
|---|
| |