| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_3258 |
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| Symbol | |
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| ID | 8254377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3866206 |
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| End bp | 3869505 |
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| Gene Length | 3300 bp |
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| Protein Length | 1099 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644936911 |
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| Product | TonB-dependent receptor plug |
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| Protein accession | YP_003093515 |
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| Protein GI | 255533143 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.363911 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0250929 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACAAT TCTATTTAAA AACAATTGTT TTGATGTTGT TCCTGCTTTC AACCGGGGCG
TATGCACAAA ACAAAAGAGT AACCGGAACA GTTTCCGGCG AAGATGATGG ACTTTCAATC
CCGGCAGTAA GTGTTGTGGT AAAAGGAACC AAAGCCGGAA CGCAAACCGA CATGAACGGC
AAGTTTAGTA TCGATGCCAA TGCGAATGAC ATTCTTGTAT TTACTTATGT GGGTTATTTG
ACCCAGGAAA TTAAGGTAGG GAATAATATA AGTCTAAAAG TGGTGTTAAA ATCTACATCA
GCCAATCTTG ATGAGGTGGT TGTGGTAGGT TATGGTACGC AAAACCGTCG CAACGTTACG
AGTTCAATTT CAAAATTGGA TAAGGAAGTG CTTGCCAATG CGCCAAGAGC CAATCTAGGT
ACTGCTTTAC AGGGCTCAAT CCCTGGTGTG CAGGTGGCTA CCAGAAGTGG ACAGCCTGGG
GCAGGTCCTG CAATTACACT GCGTGGGGGG GCAAGTATCA ACAGTCCGGG TGGACCACTT
GTTATTGTTG ATGGTGTGAT CCGTGATTAC AATGATATTT CTTCCGAGAA CGTTGAATCC
ATGGAAGTAT TAAAGGATGC TTCTGCTACG GCCATTTATG GAGCCAGGGC CAATAATGGT
GTAATTTTAA TTACAACCAA AACCGGTAAA GCAGGAGTTG CCCAACTTTC TTACAAATTT
ACTGGTGGTT ACAACCAGAG GAGAGCAGGT TATCAATACA TGGGTGCAAA AGATTATATC
TATTATACAC GTCTTGGATA TCTTAATGCT GGCAGAACTC TTGCCCAGGT AAATGGATCA
AGAGGATTGG GTTTGTTAAC CGGTGCGGCA GACCTGGCCA GTTTTGATAT CCGGTCTTAT
GTAGCTGGAA CTACTCAGCT GCCTGCCGGC TGGGATATTG TAGATGACCC TTACGGGGGA
CAGATCATGT TTAAAGACCA CGGAGGCGAA GTAGAGAATG TGGTGTTCAG AAATACGTAT
ACCAAAGACC ACTATGTGAA TGCAAGTGGA GGAAATGAAA AGGGAAAATA TTTTGCTGCC
TTCGATGCAT ATAACGAAGA CGGGGTAATT GTAGGTTCAA AGTACAAACG TTATACCGGC
GACATTAATG GTTCTTATAA GGTAAAACCA AGTGTTGAAG TAGCAGGCGG GGTTACGCTT
TCAACTTCTT CACAGATTGG GGTAATCGGA TCGGAGGTAA ATTCCATATA TAGGAGTCTG
GCCATCTGGC CTACATTCAA TCCTTGGCTT GATGAAGGAA AAACGCAACC CAATCCGGGA
AATGGAGTAA ATGATGGAAA CCCTTTATAC TGGTTGGGCA GATTAAACAG GACAAACGAA
GTGAACAAAG TAGTGGTAAA CGGCTCTGTA AAATGGGACC TGTTACCAGG ATTGTATTTT
AAAGGTACGG GAAATGCTTA TCTATTTGAC CGTCTGGACC AATCGTTCCA GAAATCAACG
CAATTGTATA CCAATATTTT TGCAAATCCC CAGACCATCA GCAGCAGTAC CAGGGATGCC
ATCAATCTCA GGAGAAGGGA ATTTCAAACC CAGTTTAACG GTATCTTGAA TTACAGCAAA
GAATTCGGGA AACACAATCT GACTGCTATG GCAGGTGCTG AAACATTCAT CAACAAAATG
TTAAACGCGC AGTTATACGG ACAAAACGCA CCAACAGATG AAATAACGAC CATTAATGCC
TCTACCGTTT TTCCTGTAAC TGTTGCAGGT GCAAGGGCTA ACTATAGTGA CAGGTCTGAG
TTCCGCATCA ATTCTGTCAT CAGCCGGTTG GCCTATGACT ATGACCAGCG GTACTTATTT
ACCGCGGTTT TCAGGGCTGA TGGTGTTTCC AGTTTGCCGC AGGGAAACCA ATGGGGATAT
TTTCCAGGTG TTTCTGCTGG CTGGAATGTG CACAAGGAAG CGTTCTTTCA GCATTCGGGC
ATAAAGAATT ACATCTCTAC TTTAAAGCCG AGGATCAGCT ACGGAGTGAA CGGAAATATT
GCCGGTTTGG GTAGGTATGA TGTTCAGGGT GTATATAGTT CACCGGCAAA TTACGATGGA
GTAGGAGGAT TTAACCATGC GAATCTTCCT AATGCAGATT TACGATGGGA AAAAAGTGCA
ACTATTGACC TGGGGCTGGA CATGGGTTTG TTAAATGACC GGATAACACT ATTGTTTGAT
TATTACAACC GTAAAACTTC CGACCTGTTG ACAAATCTTG ATTTGCCGGC TTATATCGGG
TATCCGCCAC TAAAAACAAA TCTGGGTACC TTACAAAACA AGGGGTATGA AATGGCCGTA
AATGCTAAGG TGCTGAATAC GTCCGGAGGC TTTACCCTTA ATCTTGGTGC AAATGCCAGC
TTTGTAAAAA GCAAAGTACT TAAATTACCT TTTAACGGTA ATGAAAATAA CAGACAAGGC
GGTCTTCAGG TATTTGATCC GGCCACAGGC CAGGTCATCT GGGTTGGAGG TATACAGGAA
GGTAAACCTC TGGGCGATAT TTATGGATTC AAACAAGTGT CCATTTTCAG AGATGCAGAT
GAGGTTTCGA GAATTGCAGG CAACAGGACA GATTTAATAG CTGGAATTAC AGGTCCTAAT
TTACCAGCCG GAACGAACGG ACGTATTACG CCTGGAGATG TGAACTGGGA AGATGTAAAT
GGAGATAACA TCATTGATTC CAGAGATCAG GTTTATCTGG GTAATATGGT GCCTAAATGG
ACAGGAGGTT TCAATGCAAA TGCAGCCTAT AAAGGGATTT CATTATATAC CCGATTTGAA
TTTGCGACCG GTCATACCAT TTACAACGAT CTGGTAGCAA GGACGCTAGG TAACTATCAG
GGTACCTTCA ATTATATTGA GCTGATGAAG CAATCGTGGT CACCTCAAAA TCCGGATGCT
GATATTCCAA AAGTGTATTT CGCCGACCAG GTTGTGGGAT CAAAACAAAA CTACACCAGG
GCAAACAATG CTGCGGCAGT AGTTAACGGT AACAACTCCA GGCTTTATGA AAAGGGAAAT
TACCTGGCCC TGAGGGAAGT TACACTTTCT TATACATTGC CTAAAACACT CATTGCAAAA
AGTAAATTCC TTGCCAGCAC AAGGGTTTAT GCCACCGGAA GCAATTTGTT TTACCTTAGC
AAATTTAGCG GTCCTGCACC AGAGGCACCT ACCGACGCGA ACAACAACAT CACCGGAATA
TATCTGGGTG CATATCCAAC TCCCAGAACA TTTGTATTCG GTCTGGAAGT TTCATTTTAA
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| Protein sequence | MKQFYLKTIV LMLFLLSTGA YAQNKRVTGT VSGEDDGLSI PAVSVVVKGT KAGTQTDMNG
KFSIDANAND ILVFTYVGYL TQEIKVGNNI SLKVVLKSTS ANLDEVVVVG YGTQNRRNVT
SSISKLDKEV LANAPRANLG TALQGSIPGV QVATRSGQPG AGPAITLRGG ASINSPGGPL
VIVDGVIRDY NDISSENVES MEVLKDASAT AIYGARANNG VILITTKTGK AGVAQLSYKF
TGGYNQRRAG YQYMGAKDYI YYTRLGYLNA GRTLAQVNGS RGLGLLTGAA DLASFDIRSY
VAGTTQLPAG WDIVDDPYGG QIMFKDHGGE VENVVFRNTY TKDHYVNASG GNEKGKYFAA
FDAYNEDGVI VGSKYKRYTG DINGSYKVKP SVEVAGGVTL STSSQIGVIG SEVNSIYRSL
AIWPTFNPWL DEGKTQPNPG NGVNDGNPLY WLGRLNRTNE VNKVVVNGSV KWDLLPGLYF
KGTGNAYLFD RLDQSFQKST QLYTNIFANP QTISSSTRDA INLRRREFQT QFNGILNYSK
EFGKHNLTAM AGAETFINKM LNAQLYGQNA PTDEITTINA STVFPVTVAG ARANYSDRSE
FRINSVISRL AYDYDQRYLF TAVFRADGVS SLPQGNQWGY FPGVSAGWNV HKEAFFQHSG
IKNYISTLKP RISYGVNGNI AGLGRYDVQG VYSSPANYDG VGGFNHANLP NADLRWEKSA
TIDLGLDMGL LNDRITLLFD YYNRKTSDLL TNLDLPAYIG YPPLKTNLGT LQNKGYEMAV
NAKVLNTSGG FTLNLGANAS FVKSKVLKLP FNGNENNRQG GLQVFDPATG QVIWVGGIQE
GKPLGDIYGF KQVSIFRDAD EVSRIAGNRT DLIAGITGPN LPAGTNGRIT PGDVNWEDVN
GDNIIDSRDQ VYLGNMVPKW TGGFNANAAY KGISLYTRFE FATGHTIYND LVARTLGNYQ
GTFNYIELMK QSWSPQNPDA DIPKVYFADQ VVGSKQNYTR ANNAAAVVNG NNSRLYEKGN
YLALREVTLS YTLPKTLIAK SKFLASTRVY ATGSNLFYLS KFSGPAPEAP TDANNNITGI
YLGAYPTPRT FVFGLEVSF
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