Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_3200 |
Symbol | |
ID | 8254319 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | - |
Start bp | 3805555 |
End bp | 3811494 |
Gene Length | 5940 bp |
Protein Length | 1979 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 644936853 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003093457 |
Protein GI | 255533085 |
COG category | [R] General function prediction only |
COG ID | [COG2373] Large extracellular alpha-helical protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.257633 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCATC TTTTACGCTC AATTCTGATT GTTGCGCTGG CCTTTAACTT TAGCTTCGCA CAGAAAAGAT TAACTGTCAG CTCCCAATCT GGCCCCTATA CTTTTATTTA CAAACTGACG GATCAGGAAG CTTTTAATAT AGCTTCTAAA ACGAAAAGCA TTATAAACGA TAGCTTTTTT CATACGCTTG TTGATACTTT TTACAATGCG AACAATAAAC CCTACACCCG GAAGCTTCCT TATGGTAATT ACCTTTATGT AAGGGCAGTT AAAAACGAAC TGTTTTACCG GCTTGGACCG GAAAATAATG TAAATCTCCA GTTCATCAAT AACAGAAAAG ATTTTCAGTT TAGCCTTACT GATTTGAAGG GCAACCTAAT TAAAGATGCT ACGGTTAGGG TAGGAAGGGG CAGGAGCATT AAATTTAATG AGCAGGCGGG TTTGTATAGC ACCGGATCGG TGGCAAAACT TGCGGTAATT ACTGTTAAAT ATAATGGCGT AAGCAATTAT TTTACTTACG ATGAAGAAGA AAAAGAAAGA CCATACCGTT CGTACAATAA TCCTTCTTTC TTTAAAAAAC TCTTTAACCC TAAACGATAT AGCCGTAACC AGTATGGTAA GGTAGAAAAA CCAAAATATA CAGGTTATAT GGTGTTTAAC AAACCTATGT ATAAACCTTT GGATTCGGTT AAGTTTAAAA CCTACCTGGT TACAGCCACA GGCAAAAGCA TTCAGAATAA ACCTTTAAGG GTTATACTTG ATAAAGATTT TAAAGGAGAG GGAATACTAC TGACCACTTT AAAGCCTTAT CGCGATGGAG GATATACGTA CAGTTTTGCA CTGACTGACA GTTTGCAACT TAAACTGGAC AGAAACTACC GTATCGTTTT GAAAGAACAG CAGGGAAAGG AATGGAAAAT GGTTTACCAG GGCAATTTCC GTTATGAAGA TTATGAACTG AAGTCGGTTA ATTTTATGGT GAGGAGCGAC AGAGAAGAAC ATAGTCCGGG AAGTCCGGTT ACCCTGTTTA TGAAAGCCAG GGATGAAAAT GAGCTTGCTG TTCCGGATGG TCGGGTAGAA GTGGTAGTGA GGACCAATAA TGCTTCAGTT TTTTATGACC GAAAGGTCTT TGTAAAGGAT ACTTTGTGGA AAACCAATGT GGTGCTTGAC CCTGTTGGTG AAACCAGGTT GATGTTGCCG GACAGTATTT TTCCAAAGGC GGACCTTAGC TTTTCTGCCC ATTTTACCTT TTTAAACAGT AACAATGAAC GGCGTACGGC CAGTAAATCA TTAAAATGTT TGGTTAAGGA CCGCAGCATT AAATTTGAAT TTCAAAAGGA CAGCCTGCGT CTGGATTATC TGGTTAAGGG CAAATCGGTC AGGCAAGAGG CGGTCATTTC TATGGATTAT CCTTATGGTG AGGCTACCGA TTCTATAAAA ATAATGCTTC CGGCAACTAT AAAAATGAAT TACAGGGGCA GCGACTATGC TGTTAAAATG GCTGATGGAT ACCGGCAGAC CATTTATCTG GAGCATTTGA AACCCGCAAT CAGTGTGAGT GCTGTGCAAA GCAAAGATTC TCTAGCTGTA TCTGTAAGCA ATGAACATAA GGTGCCTTTC TGGTACAGCA TTTTTTCAGG TAATAAGGTA TTGTTAAAAG GTTATACCAC CCGTTTGGAT ACCCTGATCA AACACAGTTC GGTAAAGGCA GCGCATGTAA AATTGAATTA CATCTGGGAT GAAGAAGAGC AAAGTACCGA AACCAGCGCT TTTTACAGAC CTCATATTTT AAATGTTAAA CTTTTGGCCC CAGAAGTGGT GTATCCAGGC CAAACGGTAA ACATGCAGGT CAAAGTTACC GACCAGAACA ACCTACCCGT TGCGGCAACA GACGTTACGG CCTACGCCTA TACCTCAAAG TTTAAGAATG GCTACAGGGT GAACCTGCCC TACTTTGGAA AAAGTTTTTT TGCCCGTAAG TTAAACCAGA AATTTGCGGC TGAAGACCTG AGTTTATCGG GCCAGCTGCC CCTTGATTGG GAAAAATGGG GGCGGGAGCT GAACCTAGAC ACGATTGAAT ATTATAAGTT TAGTCGGACG AAAGACCTGT ATGCCATAAT GGAAAATGGT GATGGCTCTG ATAGTGCTAT TGTGGCCCCC TTTGTAATCA GAAACGGGAA CATTGAGCCG GTGCATGTGC TGTACATTGA CGATCGTCCG GTATATTTTA GTCAGGCCAG TCAATTGCAG CGTTATGCAT TCAGCGTTAC TCCGGGCAGG CATAATATCC GTATGCGTAC AGCCTGGTAC ACGGTTAGTC TGGACGATTT TGAACTGCCG AAAGGTAAAA AGACAATTTT AAGTGTGGCT GCCGATTTGC AAAATACCAA GGCAAAGGTA AGCACGGCCC CTTATACCAT GACCAGTCAG GAAGCTGCAT TTCTGACCGA TTACATGCTG CGTATTGAGA ATAATTTTGG TGGTGAAAAA GCGATCCTTA CTGCAGGTAA TACCGAACAT TTGCTGAACC TTCCGGATGT TTCTGCAAAT GCAGGCATGC AGCAGCGCTG GCAGGAAGGT CTGACACCGG TAAATCAGGG GAATACTTTA CTCGTGGGCC CATTTGCCGA AAATCTGCTC GAGTTTAAAT CGGGCGGACT TAATCAGAAT TTTTTAAAGG AACCGGGTTA TACTTATACC TTTTTACCCG GATTGCTCAA ACAAAAATCG TACACCAGCC CTTATGGTTT TAATACCTCC CTGAATACAA CTACAGGAAC CACTGATTAT AAGGAATATC CCTTAAAAAA AGGTGAGATA GACAGCCTCT GGAATGCTTA CCTTGACCTG CGCAGCAGTA CCATACCACT ATTTAATAAC GGCTACAGTT ATGGAAATAA TAAAGATTTT GGCCGTTTGG TAATGAAACT GGATACCAGT ATTTCAAAAG CGATGCCTTA CTTAAAAAAT ATCATCATTT ATAAATCTGA TCAGCCCGAT TTTTTACAAA TTTATCCTGG CAATACAGGC TATTTTAATG CACTGGAAAG CGGTAAATAC CGCATCATTT ATCTGTTTAA GGACAACCGT TATTTTGTTG CAGAAGGGGT GGTCATCCAT GCCGGCGGTA TCAATTATTT TGAGTGGAAG GACATGAAAA TACTTAAGGC GGATGACCTG AGCAAAAAAA TAGACCAGCA CATAAAATCT GTAAACATTG GCCGGAACAG TAAAAGACCC GAAAATGTAC AGCAAAAAAT ACTGGAAGAT ATCAATGGGC AATATTTTGA TGAGTCGATC CTGACCGGTA AAATGAGCGG CAGGGTAATT GATGCCGGTG ATAAGCGACC AGTTCAGGGG GCGGTAGTGA AAATAAAAGG GGCAAATTAT ATGACCCGTA CAGACGTTGA AGGCCGCTTT GTACTTAAAA GCCCTAAAAA AGGAAAAGTG CTGGTCTCTA TGATAGGTTA TGATACAAGA GAGGTCAACG TTGTGAATAC TGATGTAGGC GACATTAAAC TGGATGCAGC CACTTCTGCT TTGGAAGAAG TTGTAGTGGT AGGTTATGGG GTACAGAAAA AACAGAATTT AACGGGCGCA GTCAGCACAC TAAGGGAGGT TGCTTTATCG GGTGCCCTGG CCGGCAGACT TTCGGGTAGG GTGGCTGGTG TCGCAGTTCC GGGTGCGGAG CAGCAGGTTA TGATCAGGGG TACAAGCTCA TTGCCTGCCG ACAAAAAGCC AATGATCCTG ATAGATGGTT TACCATTTGA TGGTGATGTG AACAGTCTTG ATCCGTCGAC AATTGAGGCC ATGAATGTAC TTAAGGATGC CTCTGCGACA GCCATTTATG GTGCCCGGGC TGCAAATGGA GTTATCATTA TCAAAACCAA AGGTGGCCTT ACCGTTGCAA ATGCGGCTGG CGAACTGGTG CAGCAGCAGC AAACCATGCG TACCAATTTT TCCGATTATG CCATCTGGCA GCCTCAATTG TTTACAGATG CTGAGGGAAA AGCAAGTTTT ACCGTTAAAT TCCCGGACGA CATTACGAAC TGGACCACCA AACTGATTGC CATGAACGGC CGTAAACAAG GTGGCATTGC CGAAACAGCT ATCAAATCTT TTAAAGTTTT AAGTGCCAAT TTTGTTTCGC CATTATTTGC CCTTGCGGGC GACAGCATCA ATGTGATTGG TAAACTGATG AATTACAGCA ATACGGATGA AAATGTAACC CGCAAATTCA GTTATAATGG TGCAGAACTG TTGAACAGCA GGCTTACCTT TAGAAATGCA AAGATTGATA CGGTAGCTAT TGTAGCCAAA GGCGCAGGTT TAAAAGTACA GGCAGACCAC ATCAATGTAG CCGACAGCCT GACTTTCGAG TATATAATGA AACAGGAGAA TGGCTATTTT GACGGAGAGA TCCGTAAAAT CCCTTTGTTC CAGACCGGCG TTACCGAAAC CAAAGGTTTC TTTAATGCAC TGACCCGCGA TACTTCCATT ACTTATAAAT TTGATGCTAC CTTGGGTAAA GTTACTTTAA GGGCCGAGGC TTCCTTATTC CCGACACTGC TGGATGAGAT GGAGAAGCTG CGCAGGTACG AATACCTGTG CAATGAACAG ATGGCCTCTA AACTGAAAGC CCTGTTACTT GAAAAGTCAG TAAGAAAATA TCTTGGCGAA GATTTTAAAG AAGAAAAGAA CATCAAATAC CTGATTAAAA AGCTGCAGGA CAACAAAAGT CCTGAAGGTA CCTGGGGTTG GTGGCAAAAC AGCGGTGAAG AACTCTGGAT TAGCTTGCAT GTTGCAGAAA GTTTGCTTGA AGCACAAAAA CAGGGCTATG CCGTTGTGCT GGATAAAAAC AAGCTTTATC GTTACCTGCT TAATAAAATG GCGGTCGGTA TTCATTTTGA TCAGGTTTAT GGGGTAAAAC TGCTCCATCT TTTAAATGAA AAACATGATT TGAAGGACTG GATAACAACT ATTGAAAAAG AAAGGGCTGC ATTAGAAGCA AAGCATTCAA AAGAAAGAAA GGCCAATTCA GATATTCCGC CTTTGGGTAA ACAATCCTTA AATGAAAAGC TGCAACTGAT GCAATTGAAA CAACTGGCTG GTATGGCCGT AGATATAAAA TGGCTGTTGG GTTTAAAAAA TGAGACCATA TTTGGCAACA GTTACTGGGG AGAAGAGGGG AATCAATTTT GGGACAACAG CATTCAGAAT ACCCTGCTGG CTTACCAGAT CCTGAAAGCC AATGGTGGAT ATAGGGACGA ACTGGACCGT ATCCAGCGTT ACTTTCTGGA GCAGAGAAGG GACGGGCAAT GGCGCAATAC TTATGAGTCT TCTTTAATCC TGGAAGCCAT ATTGCCGGAA CTGATGAGAA GCCCCGGTAA AAAGCTGGAA CCTGCTTCCA TTGTCTTTAA CCAAACAGAA ACTATTACCA GTTTTCCATT CAGCAGGGTA GTGGCACCCG AGGCTTTAAC CCTGGGGAAA AAGGGTGATG CACCAGTTTA TTTCACGGCA TATCAGCAGT TCAACAATCC GCAACCCAAA AAGGCAAGTA AAGATTTTGG TGTGAAGTCA TGGTTTGAGC AGCAGGGAGC TGAAGTTGGC AAACTAAAAG CAGGAACGCT GGCTACATTG CAGGTTGAAG TTGAGGTACG TGCCGACGCA GATTATGTAA TGATAGAGAT ACCAATCCCG GCAGGATGTT CTTATGAGCA AAAAATGCAA AGTTTTTGGG GTGTTGAAAC GCATCGGGAA TACTTTAAGC ACAAAACATC CGTTTTCTGT ACCAAGCTGA AAAAAGGGAA ATATCGTTTT GCAGTACAAC TGATGCCCAG GTATTCGGGC AATTATAATT TAAACCCCGC TAAGGCAGAA ATGATGTATT TCCCGGTATT TTATGGAAGG GAAGGCATGA AACGGATTAT TGTGAAGTAG
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Protein sequence | MKHLLRSILI VALAFNFSFA QKRLTVSSQS GPYTFIYKLT DQEAFNIASK TKSIINDSFF HTLVDTFYNA NNKPYTRKLP YGNYLYVRAV KNELFYRLGP ENNVNLQFIN NRKDFQFSLT DLKGNLIKDA TVRVGRGRSI KFNEQAGLYS TGSVAKLAVI TVKYNGVSNY FTYDEEEKER PYRSYNNPSF FKKLFNPKRY SRNQYGKVEK PKYTGYMVFN KPMYKPLDSV KFKTYLVTAT GKSIQNKPLR VILDKDFKGE GILLTTLKPY RDGGYTYSFA LTDSLQLKLD RNYRIVLKEQ QGKEWKMVYQ GNFRYEDYEL KSVNFMVRSD REEHSPGSPV TLFMKARDEN ELAVPDGRVE VVVRTNNASV FYDRKVFVKD TLWKTNVVLD PVGETRLMLP DSIFPKADLS FSAHFTFLNS NNERRTASKS LKCLVKDRSI KFEFQKDSLR LDYLVKGKSV RQEAVISMDY PYGEATDSIK IMLPATIKMN YRGSDYAVKM ADGYRQTIYL EHLKPAISVS AVQSKDSLAV SVSNEHKVPF WYSIFSGNKV LLKGYTTRLD TLIKHSSVKA AHVKLNYIWD EEEQSTETSA FYRPHILNVK LLAPEVVYPG QTVNMQVKVT DQNNLPVAAT DVTAYAYTSK FKNGYRVNLP YFGKSFFARK LNQKFAAEDL SLSGQLPLDW EKWGRELNLD TIEYYKFSRT KDLYAIMENG DGSDSAIVAP FVIRNGNIEP VHVLYIDDRP VYFSQASQLQ RYAFSVTPGR HNIRMRTAWY TVSLDDFELP KGKKTILSVA ADLQNTKAKV STAPYTMTSQ EAAFLTDYML RIENNFGGEK AILTAGNTEH LLNLPDVSAN AGMQQRWQEG LTPVNQGNTL LVGPFAENLL EFKSGGLNQN FLKEPGYTYT FLPGLLKQKS YTSPYGFNTS LNTTTGTTDY KEYPLKKGEI DSLWNAYLDL RSSTIPLFNN GYSYGNNKDF GRLVMKLDTS ISKAMPYLKN IIIYKSDQPD FLQIYPGNTG YFNALESGKY RIIYLFKDNR YFVAEGVVIH AGGINYFEWK DMKILKADDL SKKIDQHIKS VNIGRNSKRP ENVQQKILED INGQYFDESI LTGKMSGRVI DAGDKRPVQG AVVKIKGANY MTRTDVEGRF VLKSPKKGKV LVSMIGYDTR EVNVVNTDVG DIKLDAATSA LEEVVVVGYG VQKKQNLTGA VSTLREVALS GALAGRLSGR VAGVAVPGAE QQVMIRGTSS LPADKKPMIL IDGLPFDGDV NSLDPSTIEA MNVLKDASAT AIYGARAANG VIIIKTKGGL TVANAAGELV QQQQTMRTNF SDYAIWQPQL FTDAEGKASF TVKFPDDITN WTTKLIAMNG RKQGGIAETA IKSFKVLSAN FVSPLFALAG DSINVIGKLM NYSNTDENVT RKFSYNGAEL LNSRLTFRNA KIDTVAIVAK GAGLKVQADH INVADSLTFE YIMKQENGYF DGEIRKIPLF QTGVTETKGF FNALTRDTSI TYKFDATLGK VTLRAEASLF PTLLDEMEKL RRYEYLCNEQ MASKLKALLL EKSVRKYLGE DFKEEKNIKY LIKKLQDNKS PEGTWGWWQN SGEELWISLH VAESLLEAQK QGYAVVLDKN KLYRYLLNKM AVGIHFDQVY GVKLLHLLNE KHDLKDWITT IEKERAALEA KHSKERKANS DIPPLGKQSL NEKLQLMQLK QLAGMAVDIK WLLGLKNETI FGNSYWGEEG NQFWDNSIQN TLLAYQILKA NGGYRDELDR IQRYFLEQRR DGQWRNTYES SLILEAILPE LMRSPGKKLE PASIVFNQTE TITSFPFSRV VAPEALTLGK KGDAPVYFTA YQQFNNPQPK KASKDFGVKS WFEQQGAEVG KLKAGTLATL QVEVEVRADA DYVMIEIPIP AGCSYEQKMQ SFWGVETHRE YFKHKTSVFC TKLKKGKYRF AVQLMPRYSG NYNLNPAKAE MMYFPVFYGR EGMKRIIVK
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