| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2952 |
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| Symbol | |
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| ID | 8254063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | - |
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| Start bp | 3517676 |
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| End bp | 3520843 |
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| Gene Length | 3168 bp |
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| Protein Length | 1055 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644936600 |
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| Product | transporter, hydrophobe/amphiphile efflux-1 (HAE1) family |
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| Protein accession | YP_003093212 |
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| Protein GI | 255532840 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.513525 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTAATA AATTCATACA CAGGCCTGTC CTGTCTATAG TGATATCGCT CATCATTACC
TTTTTGGGGG TTTTGGCGGC AACCCAGTTA CCGGTAACAC AATTTCCTTC TATTTCTCCT
CCAAAAGTGA ACATCACTGC GGAATACCCC GGGGCCAATG GCGAATTAAT GATCAAATCT
GTTATCATTC CACTTGAGCG GGCCATTAAC GGTGTTCCCG GAATGAAATA CATGGCTTCT
GATGCGGGGA ATGACGGAGA GGCTACCATA CAGGTCATCT TTAACCTGGG TACCGATCCT
AACCAGGCTT CAGTAAATAT CCAGAACCGC GTGGCCTCGG TAATCAATAA GCTGCCGCCA
CTGGTGGTGC GCGAGGGTGT TAAAATTACT CGTGAAGAGT CCAACATGCT GATGTACATC
AACCTGTACA GCAAAGACCC CAATATGGAC CAGAAGTTTC TTTTCAATTA TGCCGATATC
AATGTTTTGT CGGAACTGAA AAGGGTTGAC GGGGTTGGTG TGGCCGATAT TCTGGGCAAC
AGGGAATATG CCATGAGGAT CTGGTTAAAG CCCGACCGTA TGCTGGCCTA TAAAATCTCT
GCAGATGAAG TACTGAAAGC GCTCGATGAG CAAAGTCTGG AAGCCTCACC CGGCAAAACC
GGAGAAAGCT CGGGCAAAAG GTCGCAGGCC TTTGAATATG TATTGAAATA TCCCGGACGG
TTCAGTACCA AGGAAGGTTA CGAAAACATC ATTTTACGAT CCAGCAACAA AGGAGAGCTG
CTGCACCTGA AAGATGTTGC GGATGTAGAA TTCGGAAGCT CCTATTACGA TCTGTATTCC
AACCTGAATG GCAAGCCTTC TGCTGCCATA ACTGTAAAAC AATCGTATGG AAGTAATGCC
AGTCAGGTAA TTAAAGACAT CAAGGCCAAA CTGAAAGAGA TCAAATCAAC TTCCTTTCCT
AAAGGAATGG ATTATGAGAT CAGCTATGAT GTTTCCAAAT TTCTGGATGC TTCTATTGAA
AAGGTAATCC ATACCCTGGT AGAGGCCTTT ATCCTGGTAG GGCTGGTGGT ATTTCTTTTT
CTGGGCGATT GGCGCTCAAC TCTGATCCCT GCCATTGCGG TACCGGTATC CCTGATCGGA
ACTTTTCTGT TCATGCAATA CCTGGGCATT ACCTTAAACC TGATTACCCT ATTTGCGCTG
GTGCTGGCAA TTGGTATTGT GGTAGACAAT GCCATAGTTG TAATTGAGGC CGTGCACGCC
AAAATGGAAG AGAAAAATCT TTCGCCACTC AAAGCTACCG AAGAGGCTAT GCACGAGATC
AGCGGGGCCA TCATCGCCAT CACTTTTGTA ATGGCTGCAG TATTTATACC GGTTGCATTT
ATGTCGGGCC CTGTTGGTAT ATTCTACAGG CAGTTTTCCA TTACTATGGC AACTTCCATT
ATCCTGTCGG GAGTGGTTGC ACTTACCCTT ACTCCCGCAT TGTGTGCCAT GATGCTGAAA
AACAATCATG GGAAACCAAA AAAGAAAACC TGGCTGAATA AAATGCTGGA TGGTTTTAAC
AATTGGTTTA ACAGTGTTTC CGGCAGGTAC CAGAACTTGC TGGGCAAAAT TGTGAACCGG
AGGGTAATCA CCTTTTGCAT GCTGCTCGCT TTTTGTGCAG GGATAGGCTT ACTCAATAAG
GTACTGCCTG CCGGCTTCAT ACCGAATGAG GACCAGGGAA TGTTTTACGC CGTAATCCAG
ACCCCTCCCG GCTCTTCACT GGAAAGGACA AACCAGATTG CCGAAAAACT GCAGAAGATT
GCGGAAGGGA TGGAAGATGT ACAATCGGTT TCTTCCCTTG CCGGTTATGA GATCCTTACA
GAGGGTACAG GTGCCAATTC AGGAACCTGC CTGATCAATC TGAAAAGCTG GGATGAGCGC
AAACACGGTG TTCAGGAAGT GATCAATGAG CTGGAAGAAA AATCCAAAGA CATTACAGGC
GCTACCATAG AATTTTTCCA GCCGCCCGCA GTACCTGGTT ATGGGGCTGC CGGTGGTTTT
GAGCTGCGCC TGCTGGATAA AGCAGGGAGC GGCGATTATA AAAAGATGGA GACCGTAAGC
CGGGATTTTG TGAAGGAACT GGAGAAACGG CCTGAATTGT CGTCTGTATT CACCTTTTAC
AGCGCCAGCT TTCCGCAGTA CATGCTGCGG ATTGACAATG ACATTGCCCA GCAAAAAGGG
GTGACCATCG AGAATGCCAT GAATACGCTT TCTACCCTGA TTGGAAGTAA CTATGAGACC
AGTTTTATCA AATACGACCG GCAATACAAA GTAATGGTGC AGGCCCTGCC GCAGTACAGG
GCCTTACCAG AAGATGTGCT GAAGCTGTAT GTAAAGAACG ACCATGAGGA GATGGTACCT
TTTTCCGCTT TCATGAAAAT TGAAAAGGTG TATGGCTTAT CAGAGATCAC CAGGCACAAC
ATGTACAATG CCTCAGAGAT CAGTGGATCG GCTGCAGCCG GATACAGCAG TGGAGCAGCC
ATTGATGCGG TAAATGAAGT GGCAAAAACC AGTTTGCCAA GAGGCTTTGG TATCGACTGG
GCAGGTATCT CCAAAGACGA GGTGGGTCGC GGAAACCAGG CCGTTTACAT CTTCCTCATC
TGTCTGGTAT TTGTATATAT GTTGCTTGCT GCCCAGTATG AAAGTTTTAT TTTGCCTTTT
CCGGTAATTC TTTCCCTTCC GGCAGGAATT TTTGGTGCAT TCCTGTTGCT CAAATTATTT
GGGCTGGAGA ACAACATCTA TGCGCAGGTA GCCATGGTGA TGCTCATTGG TTTGCTGGGC
AAGAATGCTG TACTGATCAT CGAATTTGCT GTTCAGAAAC ACAGGGCTGG CAGCTCCGTA
CTCAAAGCGG CAATCGAGGG GGCATCGGTT AGGTTCCGCC CGATCCTGAT GACCTCTTTT
GCATTTATAG CGGGACTGAT CCCACTGGTT TTTGCCTCGG GCCCGGGGGC AACAGGTAAC
CGGACAATCG GTTCTGCCGC TGCCGGAGGT ATGCTTTTCG GAACGGTATT CGGCGTAATC
ATTATACCCG GGCTGTATTA CATATTCGGT AAAATATCCG AAAAACACCT GCTTGTTAAA
AACGAAGAAG AAAACCCTTT AACCGAAGAA ATTGATCACA ATGTATAA
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| Protein sequence | MFNKFIHRPV LSIVISLIIT FLGVLAATQL PVTQFPSISP PKVNITAEYP GANGELMIKS
VIIPLERAIN GVPGMKYMAS DAGNDGEATI QVIFNLGTDP NQASVNIQNR VASVINKLPP
LVVREGVKIT REESNMLMYI NLYSKDPNMD QKFLFNYADI NVLSELKRVD GVGVADILGN
REYAMRIWLK PDRMLAYKIS ADEVLKALDE QSLEASPGKT GESSGKRSQA FEYVLKYPGR
FSTKEGYENI ILRSSNKGEL LHLKDVADVE FGSSYYDLYS NLNGKPSAAI TVKQSYGSNA
SQVIKDIKAK LKEIKSTSFP KGMDYEISYD VSKFLDASIE KVIHTLVEAF ILVGLVVFLF
LGDWRSTLIP AIAVPVSLIG TFLFMQYLGI TLNLITLFAL VLAIGIVVDN AIVVIEAVHA
KMEEKNLSPL KATEEAMHEI SGAIIAITFV MAAVFIPVAF MSGPVGIFYR QFSITMATSI
ILSGVVALTL TPALCAMMLK NNHGKPKKKT WLNKMLDGFN NWFNSVSGRY QNLLGKIVNR
RVITFCMLLA FCAGIGLLNK VLPAGFIPNE DQGMFYAVIQ TPPGSSLERT NQIAEKLQKI
AEGMEDVQSV SSLAGYEILT EGTGANSGTC LINLKSWDER KHGVQEVINE LEEKSKDITG
ATIEFFQPPA VPGYGAAGGF ELRLLDKAGS GDYKKMETVS RDFVKELEKR PELSSVFTFY
SASFPQYMLR IDNDIAQQKG VTIENAMNTL STLIGSNYET SFIKYDRQYK VMVQALPQYR
ALPEDVLKLY VKNDHEEMVP FSAFMKIEKV YGLSEITRHN MYNASEISGS AAAGYSSGAA
IDAVNEVAKT SLPRGFGIDW AGISKDEVGR GNQAVYIFLI CLVFVYMLLA AQYESFILPF
PVILSLPAGI FGAFLLLKLF GLENNIYAQV AMVMLIGLLG KNAVLIIEFA VQKHRAGSSV
LKAAIEGASV RFRPILMTSF AFIAGLIPLV FASGPGATGN RTIGSAAAGG MLFGTVFGVI
IIPGLYYIFG KISEKHLLVK NEEENPLTEE IDHNV
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