| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_2439 |
|---|
| Symbol | |
|---|
| ID | 8253546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 2834373 |
|---|
| End bp | 2835140 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 644936089 |
|---|
| Product | LytTr DNA-binding region |
|---|
| Protein accession | YP_003092705 |
|---|
| Protein GI | 255532333 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3279] Response regulator of the LytR/AlgR family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.697869 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATCA TCATATTTGA GGATGAAAAA CACAATGCAG AAAGGCTGAT CCAGCTGCTG
CAAAAATGCC TTGAAACTGT TGAAGTGCTG GCGGTTATTG AGTCGGTAGA AGAAGGATTA
AAATGGCTTA ATGTGCATGA AGACCTTGCT GAACTGATTT TTATGGATAT CCAGCTTTCA
GACGGAAACT GTTTTGAACT GTTTAAGCAA AAGGAGATCC ATACCCCGAT TATTTTTACC
ACTGCTTATG ATAGTTTTGC CCTGCAGGCT TTTAAAGTTT ACAGCGTAGA TTATTTAATG
AAGCCGATTG ATGTAAAGGA TTTACAGCGG GCCATTGAAA AATATGAGTA TTTTAAGGTA
CCGGCGAATC CGGCCCTGAA CATTTCACAG ATTGCCGAGG AGTTCTTTAA AAGAGAACAC
ACCCGGTTTA TTGGCAAGAT AAACAACCAG CTGGTATATG TGAAAGCAAG GGATATTGCC
TATATATATT TTTTGGATGG CCTTACCCGG GCAATAAACA TGACTGGGCA GGAGATACCT
TTGGATTATT CGCTGGAACA GATGGAGAAG CTGCTAGACC AGCGGTTGTT TTTCAGGATT
AACCGAAAGC TTATTGTTCA TATAGATGCC ATAAGAAAGA TCACCACTTA TTACAACAGC
AGGTTTGTGA TACAGTTGTT TCCGGCCACC GATATGGAAG CGATCATCAG CAGGGAAAGG
GTAAGTAGTT TTAAGGCCTG GCTGGAGGGC CGGGCTGTGG TTAATTAA
|
|---|
| Protein sequence | MKIIIFEDEK HNAERLIQLL QKCLETVEVL AVIESVEEGL KWLNVHEDLA ELIFMDIQLS
DGNCFELFKQ KEIHTPIIFT TAYDSFALQA FKVYSVDYLM KPIDVKDLQR AIEKYEYFKV
PANPALNISQ IAEEFFKREH TRFIGKINNQ LVYVKARDIA YIYFLDGLTR AINMTGQEIP
LDYSLEQMEK LLDQRLFFRI NRKLIVHIDA IRKITTYYNS RFVIQLFPAT DMEAIISRER
VSSFKAWLEG RAVVN
|
|---|
| |