| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1958 |
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| Symbol | |
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| ID | 8253062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 2260665 |
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| End bp | 2262812 |
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| Gene Length | 2148 bp |
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| Protein Length | 715 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 644935609 |
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| Product | lipopolysaccharide biosynthesis protein |
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| Protein accession | YP_003092228 |
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| Protein GI | 255531856 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0263254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.000489248 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGATATTA AAAGGTTTTC GAAAATACTA AAGAAGTTTT CATGGATATT GATTTTATTG
CCAGTAATTG CTGGGACCCT AACTTACTTT CTCTCCAAAA ATCTTCCGAA AAAATATAAA
TCAGAAGCAC AGATAGCCAC GGGACTTGTA GACCAGTCTA AACAAATATC AACCCAAGTT
CAATCTGATT TTTTTAAGAT CAGCCAGCAA TTTAGTAATA TCATTGAAAA AATGAAAATG
AGAAAAATGA TGGGAATACT TTCCTATCAT CTCATTATTC ATGATTTAGA AAATCCAAGC
ACTGCTTTCA GAAAAAACAG TTCTAAAATA GATTCACTGT CCCAGTCTGA TAAATCAGAA
TTAATTAATA TCTACAAAAA AAAGCTAAGT GAAAAAGCTA CAATTACCGT TTTGGACAAT
AGAAATAAAT TCAAATTATT CGATTTGCTC CAATCAATGG GATATGATGA AGCTAGTATC
AATGAAGATT TGACCATTTA CAGAGCAGAG AACAGCGACT TCATAAATGT GCAGTTTACT
TCTGAAGATC CTTTGTTATC TGCTTTTGTA GTAAATACGC TTTCAACAGA GTTCATTAAT
AATTATAGCG TAGAAGTTTA TAATAATCAG AACAACTCTA TTTTGCTTCT AGATTCATTG
TTAAAGAAGA AAGAACAAGA TATGAATGCG AAAAATAGCG CACTGAAGGA CTTCAAAATG
AAAAACGGAG TCTTAAATGT TAATGAACAA GGTGCAACTT TATACGCTCA GATATCTCAA
TATGAAGAAA AAAAGGCGCA GGCGATAAGA GATATACAAG CTAATTTAGG TGCATTATCG
GCTATTAATA AAAAGCTGAG TGGGAAAGAT GAACCGTTTT TAGGAGGGAG TGCCATTGAA
GACAATAATA ATATTCTCAA TTTAAAATCA CAGATAAAAA CAGCCAATGA CAGGTATATA
GACGGAGGTT TTAAAGTAGC AGATAAAAAG AAAGTAGATT CTTTACAAAA TCTGCTTAGT
ATCCAGTCTT CCAAAGTCTC AGATAAAAAT GTAACTGATC CTCTTGTTCC AAGACAGGGA
CTTGTTCAGC AAAAAATAAA TCTTGAAGTA TCTACCGACC AGATTAAAAA TACCATTAAA
TCAATTGATA GAGAGTTGGC TACTTTAAAA GCAAAGTACA GTACAATGGT GCCATTTGAT
GCTGGCATTC AAAACTACGA ACGCGATGCC GATATTGCTA CGAAAGATTA TATGGCAGCA
CTTGATCGGA CCAATCAAAG TAGAACGGAG CAAAACACTG GTTTAAAGCT TCAGATCGCA
CAAATTGGTT TACCAGGTAC GCCAGAAAAA TCAAAGGCGA TACTGTTTAT TGCAATGTCT
GCCGCTGCCA GTTTTATGTT GTGTTTTGTT ATTCTATTGA TTCTTTTTCT GCTTGACAGA
TCTGTTTATA CCACAGCTCA ATTGGCCAAA CAAACCGGTG GGCCAGTTTT AGGCTTACTC
AATTTAATTA CAGAATCAGA CAAAGAACCC AAAACGATTT GGAAAGATAA AGGAGACAAT
TTAAATTATA ATGTCTATAA AGACCTTTTA AGATCCGTTC GGTTTGAAAT TGATAAAGCA
TTCGGTGATA GTGAGTCAAA AATATTAGGC ATCACAAGTT TAAATATTGG TGAAGGAAAA
TCATTTTTAG CATCCAGTTT GACTTATGCA TTTGCTATGA CTGGAAAAAA GGTATTGCTT
ATAAGTAGCG AAGAAGATAG TGTAGATAAG GATGGATCTC AGAAACTGAT CCCCAGTGAA
TTTGTAGGTA CATTTATTGT GAAGAAAGAA GTACAAACAG AAGACCTCAT TACTGTGTTT
AATATGAAAT CCAGCAATTC TTCTTTATTG GAAACTCAGA GCAGTGCTAA CATAAAAAAT
GGGTTTGATC TTTTACGGAA GGAGTTCGAC TATATTATAA TTGACATCAA TAACTTAAAG
GATGTTAACA ATACCAAAGA ATGGTTGTAT TTTACGGACA GGAGCATTGC GGTATTTGAG
TATGGTAAAT CAATAGGAGA TGGAGATGCT GAATATATCA ACTATATCAG GAACCATCCA
GGTTTTATGG GATGGATACT CAATAAATTT AAGTATAAAA AGAAATAG
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| Protein sequence | MDIKRFSKIL KKFSWILILL PVIAGTLTYF LSKNLPKKYK SEAQIATGLV DQSKQISTQV
QSDFFKISQQ FSNIIEKMKM RKMMGILSYH LIIHDLENPS TAFRKNSSKI DSLSQSDKSE
LINIYKKKLS EKATITVLDN RNKFKLFDLL QSMGYDEASI NEDLTIYRAE NSDFINVQFT
SEDPLLSAFV VNTLSTEFIN NYSVEVYNNQ NNSILLLDSL LKKKEQDMNA KNSALKDFKM
KNGVLNVNEQ GATLYAQISQ YEEKKAQAIR DIQANLGALS AINKKLSGKD EPFLGGSAIE
DNNNILNLKS QIKTANDRYI DGGFKVADKK KVDSLQNLLS IQSSKVSDKN VTDPLVPRQG
LVQQKINLEV STDQIKNTIK SIDRELATLK AKYSTMVPFD AGIQNYERDA DIATKDYMAA
LDRTNQSRTE QNTGLKLQIA QIGLPGTPEK SKAILFIAMS AAASFMLCFV ILLILFLLDR
SVYTTAQLAK QTGGPVLGLL NLITESDKEP KTIWKDKGDN LNYNVYKDLL RSVRFEIDKA
FGDSESKILG ITSLNIGEGK SFLASSLTYA FAMTGKKVLL ISSEEDSVDK DGSQKLIPSE
FVGTFIVKKE VQTEDLITVF NMKSSNSSLL ETQSSANIKN GFDLLRKEFD YIIIDINNLK
DVNNTKEWLY FTDRSIAVFE YGKSIGDGDA EYINYIRNHP GFMGWILNKF KYKKK
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