| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1579 |
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| Symbol | |
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| ID | 8252681 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1866755 |
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| End bp | 1868233 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644935233 |
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| Product | glycoside hydrolase family 28 |
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| Protein accession | YP_003091854 |
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| Protein GI | 255531482 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5434] Endopolygalacturonase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0814382 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAATA TATTGTTAAT CATAGGTGTC TTACTTAGCC TTAATCTAAT GGCTAAGGAT
TATCCCGCAC ATGATTTTGG TATCCAGTCT GACGGAAAGA CGCTAAATAG CAGATCAATT
CAAGCTGCTA TTGATTATAT TTCTACACAT GGCGGAGGCA GATTGGTTTT TTCGGCAGGG
AGCTATGTCT CAGGAACGAT TTATCTCAAA TCTAATGTGA CCTTACACTT AGAAAGTGGA
GCAAGCATAT TGGGCTCCAA TAATCCATTT GATTATATCA AAGATCCGGC GGTAAACTGG
CAGTCGCTGA TTTTTTCCAT TAAACAGGAA AATATTGGTA TTACAGGCCC GGGAATGATT
AATGGACGGG GATTTACGAC AGCAATAAAT GCACTTAGTA ATGTGCATCG TGGTATTTTT
AAAGATGCGC TAAAGTATGA TCGCATTCAG GAAGGGAACC GTCCGCAGAA TATTTATTTT
AGGGAATGCA AAAATATTGT CATTAAAGAC ATTACGTTAA AAGATCCGGC AAGCTGGAAC
CAAACCTATG ATCAATGTCA AAACCTGTTG GTAGACAACA TTACTGTAGA CAGTAAATCT
TATTGGAATA ATGACGGTGT CGATATTGTC GACTGTAAAG ATGTCATCGT TCGTAATTCC
TATTTTGATG TTGCAGATGA TGCGATTTGT TTGAAATCAC ATGATGTAAA TGCGCTGTGT
GAAAATATAT TGGTTGAAAA TTGTACGGCC AGATCGAGTG CAAACGGATT AAAATTTGGA
ACAGCTTCAA GAGGAGGTTT CAGGAATGTA ACGGTTAAGA ACCTGACCAT ATTTGATACG
TATAGATCTG CCATAACTTT TGCTGCGGTA GATGGTGGAT TTGTTGAAAA TATAGTAGTT
GATGGTGTAA AATCAATCAA TACCGGAAAT GTAATTTTTT TACGGATTGG CGATCGCTGG
ACTAAAGGGA AAAAACCTTA TATGAAAAAT GTAGTGATCA AAAATGTATA TGCCGAAGTT
CCCTTAAATA AAGCTGATGC CGGATATAAC TACGAAGGTC CTATAGAAGA TCTTCCCCGA
AATATTTCGC CAGCCAGTAT AGTCGGTTTA CCTAACTATA AGATTGAGAA CGTGACCATT
GAAAATGTGG AGATTGTTTA TCCAGGAGCT GGAGATCCAT TTTATGCAAA ACGAGGGTTA
ACCTCGAAGG AGTTGGACAG CATTCCGGAA ATGCCGATTG CCTATCCTGA ATTTTCGCAA
TTTAAAGAGC TCCCGGCCTG GGGTTTTTAT TTAAGACATG CAAAGAATAT CACCTTTAAC
AATGTCGTAT TTAAAGCTAA AAAGACCGAT TATCGCCCTG CAATTGTGAC AGACGATGTG
GAGGATTCAA AATTCATTAA TGTTAAAGTT GTTGAGCCAA AAGCGGAGCA TAAAAAACAG
ATTTTCCTTT ATAATTCTAA AAATACCAAG ATTCAATAA
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| Protein sequence | MKNILLIIGV LLSLNLMAKD YPAHDFGIQS DGKTLNSRSI QAAIDYISTH GGGRLVFSAG
SYVSGTIYLK SNVTLHLESG ASILGSNNPF DYIKDPAVNW QSLIFSIKQE NIGITGPGMI
NGRGFTTAIN ALSNVHRGIF KDALKYDRIQ EGNRPQNIYF RECKNIVIKD ITLKDPASWN
QTYDQCQNLL VDNITVDSKS YWNNDGVDIV DCKDVIVRNS YFDVADDAIC LKSHDVNALC
ENILVENCTA RSSANGLKFG TASRGGFRNV TVKNLTIFDT YRSAITFAAV DGGFVENIVV
DGVKSINTGN VIFLRIGDRW TKGKKPYMKN VVIKNVYAEV PLNKADAGYN YEGPIEDLPR
NISPASIVGL PNYKIENVTI ENVEIVYPGA GDPFYAKRGL TSKELDSIPE MPIAYPEFSQ
FKELPAWGFY LRHAKNITFN NVVFKAKKTD YRPAIVTDDV EDSKFINVKV VEPKAEHKKQ
IFLYNSKNTK IQ
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