Gene Phep_1537 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_1537 
Symbol 
ID8252639 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp1824808 
End bp1825980 
Gene Length1173 bp 
Protein Length390 aa 
Translation table11 
GC content45% 
IMG OID644935191 
Producthypothetical protein 
Protein accessionYP_003091812 
Protein GI255531440 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3408] Glycogen debranching enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.522426 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.175013 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAGAGC GAAACTGGCA GGAGATAGAA AAAGCAAAAA CGGCTGCCCT GGAAGTGTTG 
ATACATAATG CTCATGGTTC TTTTTACGGA CTCCCGCGAA CGGCTGGCTG GGGGTATCCC
GAGCCTTATA CCAGAGATCT GATGCTTGCC GCAATTGGTA TTGCAGTTAG TGGAAATGAA
GAGTTGATAA AAGTGATCCG TAAAACGATG ATGGTACTTG CTAAAAATCA ATCGATAAGA
GGTCATATCC CTTCTCTTGT ACATGATGCT GAAAACAGGG GTGCCAGTGA TACCACTCCT
TTATTTTTAC TTGCGGTAGG CATTTACAGG AGGCTGCTTA ACGAGGATCA TTTCCTGGAA
GAAGCGGTAC AGAAAGCCCT GACCTGGATG GAGTACCAAA GTCCATCCGA TGATGTGCTG
GTGGCCCAGG AGCCTACAAG TGACTGGCGC GATGAACAAT GGGTTTTGGG TTATGGTTTA
TTTGTAAATG CAACAGTATA TGCTTATTTA CGGATGCTTG GACAACACCG GCGGGCAGAT
ATGCTCAGGA ATGAAATGCG ACATTTTACC ATTACAGCTA AGGTAATACA CCGTCATGTT
CATGAGGGTT TAATGGTAAA AAATAAACCG TACTTTGCAT TATGGTCTTA TAAAGTATAC
AGCAGTGAAC GGTTTGATCT GCTGGGAAAC AGTATTGCCA TCTTATCCGG ACTGGCCCCC
CTAACCAGGG CGCAGAAAAT GGTTTCATGG ATAGAAGAGG AGTGTAAGGA GATGAAGCGG
AATGGAGAAC TGGCCGTCGA CCTTGCTCCT AATTTTTTCC CTTTTATTTA TCCCGGACAT
CCGGACTGGA TAGACCGCTA TGCCGATTTT AATATGCCTG GAAATTATCA CAACGGCGGG
ATCTGGCCCT TCATATCCGC ACTTCATATT GCAGCTCTTG TTGCAGCAGG CAGGCATAAA
CTGGCGATGG AGAAACTTTA TGTACTTACT GATCTAATTA AAATTTCAGT AAATAAAGAG
CTGCAATATG GCTTTAACGA ATGGTATAGG ACTCAGGATG GGCAGCCAAT GGGCCAGGAT
TGGCAAACCT GGTCGGCCGC GCTTTATTTA TATGCGGCTG CAGCTGTGGA AGGAAAACAT
ACGCCCTTTT TTGAGGAGTG CAGGACTTAT TAG
 
Protein sequence
MEERNWQEIE KAKTAALEVL IHNAHGSFYG LPRTAGWGYP EPYTRDLMLA AIGIAVSGNE 
ELIKVIRKTM MVLAKNQSIR GHIPSLVHDA ENRGASDTTP LFLLAVGIYR RLLNEDHFLE
EAVQKALTWM EYQSPSDDVL VAQEPTSDWR DEQWVLGYGL FVNATVYAYL RMLGQHRRAD
MLRNEMRHFT ITAKVIHRHV HEGLMVKNKP YFALWSYKVY SSERFDLLGN SIAILSGLAP
LTRAQKMVSW IEEECKEMKR NGELAVDLAP NFFPFIYPGH PDWIDRYADF NMPGNYHNGG
IWPFISALHI AALVAAGRHK LAMEKLYVLT DLIKISVNKE LQYGFNEWYR TQDGQPMGQD
WQTWSAALYL YAAAAVEGKH TPFFEECRTY