| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1245 |
|---|
| Symbol | |
|---|
| ID | 8252343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 1467227 |
|---|
| End bp | 1468210 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 644934898 |
|---|
| Product | cell wall hydrolase/autolysin |
|---|
| Protein accession | YP_003091523 |
|---|
| Protein GI | 255531151 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.860485 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTACAACT ACACAAGATT TTTTATCCTG TTGCTGCTGG GCATAATCTT GAGTGGTTTT
GGATTAAAAG ATAATGTGCT GAAGGGAAAA GTGATTTGTA TAGATGCAGG ACATGGAGGT
ACCGCGCAAA CAGATCTTTA CAGGCAGGGA CCAACTGGTG AACGTGAAGA ATGGGTAAAT
TTAAGGGTAG CCATTTTACT GAAAGCGCTG CTGGAAGCTG AAGGTGCAAA AGTGGTCATG
ACGCGTACCA GCGATGATTT TGTACCCCTG GCAACCCGTT CCAAAATAGC AAGGGAAAAT
AAGGCGCAGC TGTTTCTGTC CATTCATCAC AATGCTACTG CCGATTCGAC GGTAAATTTC
CCTATTGTTT ATTTTCACGG CAAATCCTCA GAAAACAAAG CCGGGGTTGC TTTTGGAAAG
GAAATTGCCA GGGCCATGCA ATCGGAATTT TATGAGGTTA AAACTCCGGT AAGTGTGGTC
TCAGACCATA CCGTTTTTGC TCTTGAGGGT GCAAGTGTGC TGCGCAATAC CTACGGTATC
CCGGGTGTAC TTTCTGAAGC TTCATTTTTT ACCAATCCAA AGGAAGAGAG ACAGCTGAAA
GATCCTGAGC ATAACAGGAG GGAGGCTGTA GCTTATTTAA AAGCCATAAG GTTTTTTTTC
AGCAATAAGG TCGAAATCAT AAAAGACAAG GACCCGAACT TTGTTATTCC GCCCTTTCAG
GGCTTACAGG AAGCTGAACG GATGAGTGAA GTGGCTAAAA AATGGCTGGA TGATTACCGG
AAGGGATCAT TGCTGATGAA AAGTAAAGAT ACTGCTGCCC TACAGGAGGC TTATGAGCTA
TTTACGCGTT CCGCACGATC TTTTCCTGAT TCCTATGTAG CCAGGCAATG CCATGAGCAG
CGGGTTTATT TATTGAAAAA GTTGGGGAAA AAGGAAGAAG CCAGACAGGA AAAACTGCGT
TCAGCTGAGT TTTATGTAAA ATAA
|
|---|
| Protein sequence | MYNYTRFFIL LLLGIILSGF GLKDNVLKGK VICIDAGHGG TAQTDLYRQG PTGEREEWVN
LRVAILLKAL LEAEGAKVVM TRTSDDFVPL ATRSKIAREN KAQLFLSIHH NATADSTVNF
PIVYFHGKSS ENKAGVAFGK EIARAMQSEF YEVKTPVSVV SDHTVFALEG ASVLRNTYGI
PGVLSEASFF TNPKEERQLK DPEHNRREAV AYLKAIRFFF SNKVEIIKDK DPNFVIPPFQ
GLQEAERMSE VAKKWLDDYR KGSLLMKSKD TAALQEAYEL FTRSARSFPD SYVARQCHEQ
RVYLLKKLGK KEEARQEKLR SAEFYVK
|
|---|
| |