| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1139 |
|---|
| Symbol | |
|---|
| ID | 8252233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | - |
|---|
| Start bp | 1335268 |
|---|
| End bp | 1336935 |
|---|
| Gene Length | 1668 bp |
|---|
| Protein Length | 555 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 644934790 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_003091419 |
|---|
| Protein GI | 255531047 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATATGC TACAAAAACT TTCCATCCGC AATTATGCTT TGATTGACAG TGTTGAGCTG
GAACTTGACA GTGGTTTAAA TATCATTACC GGTGAAACCG GCGCAGGTAA ATCAATCATG
CTAGGTGCTT TATCGCTGAT ACTGGGGCAG CGTGCCGAGA CTAAGTACTT TTTTAATCAG
GATAAGAAAT GCATCATTGA AGGACATTTT TTACTGGTCA GCGCTCATTT GCAGGCTTTG
TTTGAAGAAA ATGACCTCGA TTTCCATAAA GAAAGTACTT TAAGAAGGGA GATCACTACA
GATGGGAAAT CGAGGGCCTT TATTAACGAT ACACCAGTAA CCCTTACTGT AATGAAACAG
GTAGGCGAAC GATTGATAGA CATCCATTCA CAGCATGCCA CACTGGAAGT TAATGATCCT
GAATTCCAAT TATCAGTAGT AGATACTCTT GCCGGACATC AGCCTTTACT CCAGGATTAC
CGCAATCAGT TTAAGCTATA TAAACAGCAA CAACGTCAGT TAACCGAATT GCAGAACAAA
GCAGATGAAG CACGAAACAG GCAGGATTAT GAGCAGTTTT TGTTCAATGA ACTGGAAAAT
GCAGATCTTC AGACCGGTGA ACAGGAAAAA CTGGAGACCG AACTGCAGAT GCTGAACAAT
TCGGAAAGTA TTAAAAGAAG CCTGCTGACC AGTTATAACC TATTAAGCGA GCAGGAAACA
GCCGTACTTC CAATCCTCAA AGAAGCGGTT AATCAACTGC AAAGCATTGA GAAATTTAAT
CCTGCATACG GAGCATTAAA TGACCGTTTA CGTTCTGCCC TGATCGAGAT CAAAGATATT
GCTGAAGAAA CATCTGCACT GGAAGAAAAC ATAATTTTTA ATCCTTTAAG GATTGAAGAG
ATCAATACCC GTTTAGACCT TGTTTATAGT TTACAACAAA AGCACAGGGT AAACAGCATT
GAAGAATTAA CTGCCATTCA GGCACAGCTT TCAGAAAACC TGGCCAATCT TTTAAGCGGT
GATGAAGAGA TTGAACGTAT GAATAAAGCG CAGGAAAAAC TCCATCGGGA ACTTGAGGAG
ACAGCAGGTA AATTATCCCT TAACCGCAAC AAATCGATTC TTCATACGGA AAGTAGCGTT
AGAGAATTGC TCCAACAGGT AGGTATGCCC AATGCTAAAA TAAAAATCGA ACAGCAGCAA
AGTGCTGAAT TGAATAAGGA CGGAAAAGAC ATTATTAGTC TCTTGTTTTC GGCAAATACA
GGTCAACCTC CTGCTCCTGT GGGCAAAGTA GCATCCGGAG GTGAGCTTTC GCGTTTAATG
CTCGCTATTA AATCTATTAT GGCCAAATAC ACTTCCTTAC CTACTTTAAT ATTTGATGAG
ATAGATACCG GTATTTCCGG AGAAACAGCG CTTCGCGTAG GTAAAGTTAT TGGAGCGCTT
GAAAAAAACA TGCAGGTGAT CTGTATTACC CATCTTCCTC AGATTGCAGC AAAAGGCGAT
GCGCATTATT TTGTTTATAA AAATGAGGAA ACTGAACGCA CGACCACCGG GATTCGCAAA
TTGAATAAAA CAGACCGCAT ACAAGTGATT GCAGAAATGT TAAGTGGCAA AACACCTGGT
GCACCAGCTA TAGAAAATGC CAGAGATCTG CTTGGTTATA AAAGCTAG
|
|---|
| Protein sequence | MYMLQKLSIR NYALIDSVEL ELDSGLNIIT GETGAGKSIM LGALSLILGQ RAETKYFFNQ
DKKCIIEGHF LLVSAHLQAL FEENDLDFHK ESTLRREITT DGKSRAFIND TPVTLTVMKQ
VGERLIDIHS QHATLEVNDP EFQLSVVDTL AGHQPLLQDY RNQFKLYKQQ QRQLTELQNK
ADEARNRQDY EQFLFNELEN ADLQTGEQEK LETELQMLNN SESIKRSLLT SYNLLSEQET
AVLPILKEAV NQLQSIEKFN PAYGALNDRL RSALIEIKDI AEETSALEEN IIFNPLRIEE
INTRLDLVYS LQQKHRVNSI EELTAIQAQL SENLANLLSG DEEIERMNKA QEKLHRELEE
TAGKLSLNRN KSILHTESSV RELLQQVGMP NAKIKIEQQQ SAELNKDGKD IISLLFSANT
GQPPAPVGKV ASGGELSRLM LAIKSIMAKY TSLPTLIFDE IDTGISGETA LRVGKVIGAL
EKNMQVICIT HLPQIAAKGD AHYFVYKNEE TERTTTGIRK LNKTDRIQVI AEMLSGKTPG
APAIENARDL LGYKS
|
|---|
| |