| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_1044 |
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| Symbol | |
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| ID | 8252138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pedobacter heparinus DSM 2366 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013061 |
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| Strand | + |
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| Start bp | 1227793 |
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| End bp | 1228710 |
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| Gene Length | 918 bp |
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| Protein Length | 305 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 644934697 |
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| Product | Xylose isomerase domain protein TIM barrel |
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| Protein accession | YP_003091326 |
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| Protein GI | 255530954 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1082] Sugar phosphate isomerases/epimerases |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGAAACAA AAGACCGCAG AAGTTTTATT AAAGATTTAG GGATGCTGAC AGCAGGGGTA
GGGCTTGCTT CGTTGCTGCC ATTGGAAGCT TTAAGTGCTT TTAAAAAGGA GCCTTATCTC
ATTTCCCTGG CCCAATGGTC GCTGCACAAT ACCTTGTTTG CCAAAAAACT GGACAACCTT
GATTTTCCGC TGAAAGCGAA AAGGGATTTT GATATTCACA TTGTAGAATA TGTAAGTATA
TTTTTTGATA AGAAAGAGAA AGACCCGGCT TACCTGAAAG AACTCAAAAA CCGGACTGAT
TCTGAAGGGA TCCAGAACCA CCTGATTATG GTAGACCGGG AAGGTAACCT GGGCGATACC
GACGATAAAG CAAGACTAAC TGCGGTAGAG AACCACTATA AATGGGTAGA TGCAGCCAAA
TTTCTGGGTT GTAAGACCAT CCGTGTAAAT GCAGGGGGAA AGGGAACAGC TGCGGAAGTA
AAAGCTGCGG CCATTGATGG TCTGGGCAGG TTAACCGAAT ACGGTAAAAA GAACAGGATC
AATGTTATTG TAGAGAACCA CGGTGGTTAT TCTTCCGATG GCAAGTGGCT GACGGATGTA
ATCAAAGGGG TAAACAGCTC TTATTGTGGA ACCTTGCCCG ACTTTGGGAA CTTTGCCCTG
GGGAACGGAA AGGAATATGA CCGGTACCTG GGCGTGGAAG AAATGATGCC TTTTGCCAAG
GGGGTAAGTG CTAAAACGAT GAAATTTAAT GCTGATGGTG AAGAAAGCGA CATCGATTAC
AGCCGCATGT TCAGGATCAT TAAAGCCGCA AAATGGAATG GAATAGTAGG GATTGAGTAT
TCAGGGGCAG GAGAAACGGA AGACGAAGGG ATCAGGAAAA CGAAGGCCCT GTTAGAGAAA
GTGTTTAAAC AGGGATAA
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| Protein sequence | METKDRRSFI KDLGMLTAGV GLASLLPLEA LSAFKKEPYL ISLAQWSLHN TLFAKKLDNL
DFPLKAKRDF DIHIVEYVSI FFDKKEKDPA YLKELKNRTD SEGIQNHLIM VDREGNLGDT
DDKARLTAVE NHYKWVDAAK FLGCKTIRVN AGGKGTAAEV KAAAIDGLGR LTEYGKKNRI
NVIVENHGGY SSDGKWLTDV IKGVNSSYCG TLPDFGNFAL GNGKEYDRYL GVEEMMPFAK
GVSAKTMKFN ADGEESDIDY SRMFRIIKAA KWNGIVGIEY SGAGETEDEG IRKTKALLEK
VFKQG
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