Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Phep_0998 |
Symbol | |
ID | 8252092 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pedobacter heparinus DSM 2366 |
Kingdom | Bacteria |
Replicon accession | NC_013061 |
Strand | + |
Start bp | 1167502 |
End bp | 1169136 |
Gene Length | 1635 bp |
Protein Length | 544 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644934652 |
Product | RagB/SusD domain protein |
Protein accession | YP_003091281 |
Protein GI | 255530909 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCAC TAACCATAAC ATTGCAGCTC GCATTAACCA TTTCACTTAT TTCAAGCTGC TCAAAAGATA CACTCAATGA GTCCTCTCCA AATATATTAC TGGCAGATAA CTTATATAAA GATAAAGCCG GATTTGATGC AGGATTAAAT GGCCTGTACG ATGAAGCCCG TCGTTCAAGG TCTGGCAGTA CGTATGGCGG TTCGACCAAT TTAATGCTTG AACCAGCGTT TATAGGTGTC GACAATGCCT ATGGAAATTA TGAAGACACC TATGAAAAGG TATTTAACAG CTGGGGTGCC AATAATAATG CCTCGGTCAT TCATTACCGT TATGTGTGGT CCTGGTTGTA CGAAACGATC AATGCTGCAA ATACCATTAT CAACAGGGCC GGACAGCCGA ACAGCCTAAC CGAAACAGAG AAAAACCAGG TGCTTGCCGA AGCCAGGTTT TTCAGAGGCT GGGCTTACCG GCACCTCATT TATTTATGGG GAGATGTTCC GTTAACACTG GAAGAATCTT CTGGTACAAA CATCCGGACT GACTGGCAAA GAACTCCGGT AGCAGAGGTT AGGGCAGCTA TAGAAGCAGA CTGGTTATTT GCAGAGCAGT TTCTTCCGGA ACTTTCTGCT GCCAATCCCG GAAAGGTGTT AAAGGGGGCT GTGCAGCATT ACCTGGCAGA ACTATATCTT GCAGAAGGTA AAAATGATAA GGCCAGGGAT TATGCTTTAA AAGTAACTAC AAATCCCAAC TATAAACTGG TTACCACGCG TTTTGGTGTA AATGCAGCTA AACCAGGTAC AGCATTCACG GATCTTTTTG TTGATGGAAA CGCCAATCGT TCAGCAGGAA ATACAGAGGC CCTTTGGGTT TTACAGAACG AATTGAATGT AGCTGGAGGA GAAGGAAATA ATATCATGCG CAGGTATTGG GTTAACCGGT ATTATTCTAT TGCAGTGAGT GGTACCGATG GCAAATCAAA GAACCCCTTT GCCGTAAGTG CCGATTATGG AGGTCGTGGC ATTGGACGCT TGTCGCCAAC AAAATTTGCA CTTACTTTGT ATGATGCCAA TGACGATAGG GGCTCTGATT ATGCCTGGCG GTTTTCGTAT GCCATTAATA ACCCTGCAGG CATACCTGTC GGGAAAAATC TTGGTGATGT CATCCAGTTG GATAGAACCT CTAACGAGAA AGTCACCAAT CCGAATTGGC CAAGCACGAG AAAATGGGAT TACGTAAGCC CACAGGATGT AACTGTAGAT CGCCAGTATA ACGATCAGAT GATGGTCAGG TCTGCCGAAA CCTTCCTGAT ACTTGCAGAA GCTTATCTGA AGTTAGGTGC AACAGATCTG GCAAAAGATG CAATTAATGC ATTGAGGACC AGGGCCCATG CAGCACAGGT TAATGCAAGC CAGGTAACTC TTGATTTTAT TCTGGATGAG CGGTCAAGAG AGCTTTTTTC AGAAGAAGAA AGACGATATA CTTTGCTGCG GACCGGAAAA TGGCTGGAAA GGGTAAAGCT TTACAATAAG ATTGCCGGGC CGGTAGTTCA GGCCAGGGAT CTTTTACTGC CCATTCCACA AAATGTGATT GATGCAAACC TGACCAGTAA GATGGCTCAG AATAAAGATT ACTAA
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Protein sequence | MKALTITLQL ALTISLISSC SKDTLNESSP NILLADNLYK DKAGFDAGLN GLYDEARRSR SGSTYGGSTN LMLEPAFIGV DNAYGNYEDT YEKVFNSWGA NNNASVIHYR YVWSWLYETI NAANTIINRA GQPNSLTETE KNQVLAEARF FRGWAYRHLI YLWGDVPLTL EESSGTNIRT DWQRTPVAEV RAAIEADWLF AEQFLPELSA ANPGKVLKGA VQHYLAELYL AEGKNDKARD YALKVTTNPN YKLVTTRFGV NAAKPGTAFT DLFVDGNANR SAGNTEALWV LQNELNVAGG EGNNIMRRYW VNRYYSIAVS GTDGKSKNPF AVSADYGGRG IGRLSPTKFA LTLYDANDDR GSDYAWRFSY AINNPAGIPV GKNLGDVIQL DRTSNEKVTN PNWPSTRKWD YVSPQDVTVD RQYNDQMMVR SAETFLILAE AYLKLGATDL AKDAINALRT RAHAAQVNAS QVTLDFILDE RSRELFSEEE RRYTLLRTGK WLERVKLYNK IAGPVVQARD LLLPIPQNVI DANLTSKMAQ NKDY
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