| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Phep_0691 |
|---|
| Symbol | |
|---|
| ID | 8251779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pedobacter heparinus DSM 2366 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013061 |
|---|
| Strand | + |
|---|
| Start bp | 799009 |
|---|
| End bp | 801387 |
|---|
| Gene Length | 2379 bp |
|---|
| Protein Length | 792 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 644934340 |
|---|
| Product | ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| Protein accession | YP_003090975 |
|---|
| Protein GI | 255530603 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0197875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGTAA TAAAAAGAGA TGGCCGCAAG GAAGCGGTAA GATTTGACAA AATAACAGCT
CGTATAGAGA AGTTATGCTA TGGTTTTAAT GCCGAACTTG TAGATCCGAT CGATGTTGCC
AAGAAGGTGA TTGAGGGTTT GTATGATGGG GTTACTACCT CGGAACTGGA TAATCTTGCC
GCAGAAACAG CAGCTTCTTT AACTACAAAG CACCCTGATT ATGCTTTGCT GGCCTCCCGC
ATAGCGGTAT CTAACCTGCA TAAAAATACC ACAAAGTCTT TCTCCAAAAC AATGGAGATG
TTATATAATT ACGTAGATTC CAAGACAGAA AAACCGGCAT CTTTAATTGC AGATGATGTA
TGGGAGGTGA TTGAGAAAAA TGCGGATATT TTAGACAGCA CCATTATCTA TGACCGGGAT
TTTGGTTTTG ATTACTTTGG CTTCAAAACT TTAGAAAAAT CCTATTTACT GAAAGTTGAC
GGACAGATCG TTGAGCGCCC TCAGCATTTA TTTATGCGTG TTGCTGTTGG TATTCATAAA
GGAGATATTG ATAGTGCCAT CGAAACGTAT AACCTGATGA GTGAGCGTTG GTTTACCCAC
GCTACCCCAA CCTTGTTTAA TGCAGCTACA CCTAAACCTC AAATGTCATC CTGCTTTTTG
CTAACCATGC AGGACGATAG CATTGAAGGT ATTTATGATA CGTTAAAACA AACAGCTAAA
ATTTCTCAGA GTGCCGGTGG TATTGGCCTG AGCATCCACA ACATCAGAGC TACAGGTTCT
TATATTGGTG GCACCAACGG AACCAGCAAT GGTATTGTGC CCATGCTGAA AGTATTTAAT
GATACTGCAC GTTATGTAGA TCAGGGTGGT GGTAAGCGTA AAGGCGCCTT TGCCATTTAT
TTAGAGCCTT GGCATGCTGA TGTACTCAGC TTTTTAGACC TGCGTAAAAA CCATGGTAAA
GAAGAACTGC GTGCGCGCGA CCTGTTCTAT GCCCTTTGGG TATGCGATTT GTTTATGAGA
CGTGTAGAAG AGAATGGCGA CTGGAGCTTG TTCTGTCCGC ATGAAGCACC AGGCCTGGCC
GATTGTTTTG GAGAAGAGTT TGATGCCTTA TACGAACGTT ATGAACAGGA AGGACGTGCC
CGTAAAACCA TTAAGGCACA AGAGTTATGG TTCGCCATCC TGGATTCACA AATTGAAACC
GGTACACCAT ATTTGTTGTA TAAAGATGCG GCTAATAGTA AATCTAACCA GCAAAACCTG
GGCACCATTA AAAGCTCCAA CCTTTGTACC GAAATTATAG AATACACCTC TAAAGATGAA
GTTGCGGTTT GTAACCTGGC TTCACTGGCC TTGCCAAGAT TCGTGATCAA TGGTGAGTTT
GACCATCAGA AATTATACGA TGTAACGTAT CAGGCTACTG TAAACCTGAA CAAGATCATC
GATTACAATT ATTATCCGGT AGAAGAAGCC AGAAACTCCA ACATGCGCCA CAGACCAGTT
GGTTTAGGTG TGCAGGGATT GGCCGATGCA TTTATCTTAA TGCGTTTGCC TTTTGAAAGT
GAAGGGGCCC GCATCTTAAA TAAAGAGATC TTTGAAACGA TCTATTTTGC TGCCATGACT
GCTTCTCATG ATCTTGCCGT TAAAAATGGC CCTTATGAAA CCTTTAAAGG TTCTCCTTTA
TCGCAGGGTA AGTTCCAGTT TGACCTTTGG AAGGTACAGC CTGACAGCGG CAGATGGGAT
TGGGAAACTT TACGTGAAAA GGTAGTAAAA GACGGGGTAT ACAACTCTTT ACTGGTTGCA
CCAATGCCTA CAGCTTCTAC TTCGCAGATT TTAGGTAACA ACGAGTGCTT TGAACCATAT
ACTTCTAACA TTTATACCAG AAGGGTATTG AGCGGAGAGT TTATTGTGGT AAACAAGCAC
CTGCTGAAAG ACCTGGTAGC TTTAGGCTTA TGGACCCCGG CCATGAAAGA CAGGATCATT
TTAGCCAACG GCTCTATTCA GGACATTGCC GAGATTCCTG ACTACATTAA AGAGTTATAC
AAAACAGTTT GGGAGATCAA AATGCGCAGC ATTATTGATA TGGCGGCCGA CAGGGGTGCA
TATATCTGCC AGTCGCAATC GCTAAACTTG TTTATCAATG CTCCAAATAC ATCAAAACTA
ACTTCAATGC ATTTTTACGC ATGGAAGAAA GGGCTGAAAA CAGGCATGTA TTACCTGCGT
ACGCAGGCGG CTTCGCAAGC AGTTAAGTTT ACTGTAGAGA ACCAGGCAGG CAAGAACATG
GAACCGGTAA TTCCGGAACA TATTGAACAA AGTGCCGAAG AGATCGTTGA AGGTCCGGTT
TGTTCAATGG AAGAAGGCTG TATCAGCTGT TCAGGTTAA
|
|---|
| Protein sequence | MFVIKRDGRK EAVRFDKITA RIEKLCYGFN AELVDPIDVA KKVIEGLYDG VTTSELDNLA
AETAASLTTK HPDYALLASR IAVSNLHKNT TKSFSKTMEM LYNYVDSKTE KPASLIADDV
WEVIEKNADI LDSTIIYDRD FGFDYFGFKT LEKSYLLKVD GQIVERPQHL FMRVAVGIHK
GDIDSAIETY NLMSERWFTH ATPTLFNAAT PKPQMSSCFL LTMQDDSIEG IYDTLKQTAK
ISQSAGGIGL SIHNIRATGS YIGGTNGTSN GIVPMLKVFN DTARYVDQGG GKRKGAFAIY
LEPWHADVLS FLDLRKNHGK EELRARDLFY ALWVCDLFMR RVEENGDWSL FCPHEAPGLA
DCFGEEFDAL YERYEQEGRA RKTIKAQELW FAILDSQIET GTPYLLYKDA ANSKSNQQNL
GTIKSSNLCT EIIEYTSKDE VAVCNLASLA LPRFVINGEF DHQKLYDVTY QATVNLNKII
DYNYYPVEEA RNSNMRHRPV GLGVQGLADA FILMRLPFES EGARILNKEI FETIYFAAMT
ASHDLAVKNG PYETFKGSPL SQGKFQFDLW KVQPDSGRWD WETLREKVVK DGVYNSLLVA
PMPTASTSQI LGNNECFEPY TSNIYTRRVL SGEFIVVNKH LLKDLVALGL WTPAMKDRII
LANGSIQDIA EIPDYIKELY KTVWEIKMRS IIDMAADRGA YICQSQSLNL FINAPNTSKL
TSMHFYAWKK GLKTGMYYLR TQAASQAVKF TVENQAGKNM EPVIPEHIEQ SAEEIVEGPV
CSMEEGCISC SG
|
|---|
| |