Gene Phep_0430 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPhep_0430 
Symbol 
ID8251515 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePedobacter heparinus DSM 2366 
KingdomBacteria 
Replicon accessionNC_013061 
Strand
Start bp502436 
End bp503422 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content47% 
IMG OID644934078 
ProductTatD-related deoxyribonuclease 
Protein accessionYP_003090716 
Protein GI255530344 
COG category[R] General function prediction only 
COG ID[COG1099] Predicted metal-dependent hydrolases with the TIM-barrel fold 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.340827 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value0.921802 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCTGTA ATGAGAATTT TGAGGAGAGA AATAAAGGCG AAAAAATACA GACTTCGCTT 
GACCTGAGCG AGATCAGCGG AATGAAGTTC TTTGATCCGC ATGTACACAT GACTTCACGT
ACTACCGATG ACTACCAGGC TATGGCCGAT GCGGGAATTG TTGCCCTGAT TGAACCGGCT
TTCTGGCTGG GGCAGCCGCG TACCCAGTTA GGCAGTTTTA CCGATTACTA TAGCAGCCTG
ATTGGCTGGG AACGGTTCAG GTCGTCCCAG TTTGGCATCA AGCATTATTG TACCATAGGC
TTAAATTCCC GTGAGGCCAA TAATGAGCAG CTGGCAGAAC AGGTGATGGA AATTTTACCA
CAGTTTATTT TTAAGGAAGG TGTGGTAGGT ATTGGTGAGA TTGGCTTTGA CGACCAGACT
GCAGCTGAAG AGAAATATTA CCGCTTACAG CTTGACCTGG CAAAAGAAGC GGGTTTGCCG
GTACAGATCC ATACGCCACA CCGCGATAAG AAAAAAGGTA CCCAGCGCAG TATGGATATT
GCCATAGAGC AGGGCCTTGA CCCTTATATG GTGATTGTAG ACCATAACAA TGAGGAGACC
GTAAAAGAGG TGTTGGACAG GGGCTTTTGG GCTGCTTTTA CCATTTATCC TTTTACCAAA
ATGGGGAATG AGCGCATGGT AGAGGTGCTG AAACAATATG GATCGGAAAG GATCATGATC
AATTCGGCGG CCGACTGGGG CATCAGTGAT CCGCTGGCCA TTCCTAAAAC TGCAGCCCTG
ATGAAAAGAT CGGGCATTAG CCTTCAGGAC ATTGAACTGG TTACCTACCG CAATGCCATT
ACAGCTTTTG CACAGAGCGG ACAGATTGAT GAGAATGACT TTTTAAGGGT GAAAAACATT
GACCAGAGCC AGAAGTTTGC CAGCAATTCC ATCTTACGTG GCGGGCAGCA ACCAAGAATA
GACAAAAACT CCATCATCAT TTCATAG
 
Protein sequence
MCCNENFEER NKGEKIQTSL DLSEISGMKF FDPHVHMTSR TTDDYQAMAD AGIVALIEPA 
FWLGQPRTQL GSFTDYYSSL IGWERFRSSQ FGIKHYCTIG LNSREANNEQ LAEQVMEILP
QFIFKEGVVG IGEIGFDDQT AAEEKYYRLQ LDLAKEAGLP VQIHTPHRDK KKGTQRSMDI
AIEQGLDPYM VIVDHNNEET VKEVLDRGFW AAFTIYPFTK MGNERMVEVL KQYGSERIMI
NSAADWGISD PLAIPKTAAL MKRSGISLQD IELVTYRNAI TAFAQSGQID ENDFLRVKNI
DQSQKFASNS ILRGGQQPRI DKNSIIIS